Training biologists in Unix command-line skills: From curriculum to interactive online tutorials

Area of Science:

• Bioinformatics
• Computational Biology
• Life Sciences Education

Background:

• The rapid expansion of data in life and health sciences necessitates proficiency in bioinformatics.
• Unix-like systems are fundamental tools in bioinformatics, yet many life scientists lack command-line experience.
• Existing training methods often present barriers related to software installation and access.

Purpose of the Study:

• To address the need for accessible bioinformatics training for life scientists.
• To introduce a structured Unix curriculum tailored for individuals with limited command-line experience.
• To implement this curriculum through an interactive, browser-based learning platform.

Main Methods:

• Development of a progressive Unix curriculum focused on bioinformatics applications.
• Implementation of the curriculum into interactive online tutorials using the Sandbox.bio platform.
• Evaluation of the teaching framework's effectiveness in diverse educational contexts.

Main Results:

• The developed curriculum effectively imparts Unix skills to life scientists.
• Sandbox.bio successfully removes technical barriers, enabling browser-based command-line learning.
• The teaching framework demonstrated inclusivity and sustainability in various settings.

Conclusions:

• This bioinformatics training framework provides widespread access to essential Unix skills for life science professionals and students.
• The combination of a tailored curriculum and an accessible platform enhances bioinformatics education.
• The approach supports the growing demand for data analysis skills in the life sciences.