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Despite the protective membrane that separates a cell from the environment, cells need the ability to detect and respond to environmental changes. Additionally, cells often need to communicate with one another. Unicellular and multicellular organisms use a variety of cell signaling mechanisms to communicate to respond to the environment.
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Signaling Connectomics: A Brain-wide Framework for Intercellular Communication.

Jongpil Shin1, Hyeonsik Oh1, Yeonji Jeong1

  • 1Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea.

Experimental Neurobiology
|April 5, 2026
PubMed
Summary
This summary is machine-generated.

Signaling connectomics maps brain-wide communication beyond synapses, revealing how diverse signaling pathways shape neural function. This framework links multicellular interactions to brain circuits and behavior.

Keywords:
Intercellular communicationOptogeneticsSignaling connectomicsSpatial transcriptomics

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Area of Science:

  • Neuroscience
  • Systems Biology
  • Molecular Biology

Background:

  • Understanding brain function necessitates mapping complex intercellular communication networks.
  • Current models often focus narrowly on synaptic transmission, overlooking broader signaling pathways.

Purpose of the Study:

  • Introduce "signaling connectomics" as a systems framework to map brain-wide intercellular communication.
  • Characterize signaling networks beyond conventional synapses, including neuromodulatory, immune, glial, and vascular pathways.
  • Provide a multidimensional view of how the brain coordinates activity across diverse cell types.

Main Methods:

  • Integrating targeted perturbations with multiplexed molecular and imaging readouts.
  • Employing cell-type-specific optogenetics, biosensors, and spatial transcriptomics.
  • Inferring causal signaling networks operating beyond conventional synapses.

Main Results:

  • Demonstrated a framework for charting brain-wide signaling across diverse pathways.
  • Revealed the influence of dynamic receptor landscapes and non-synaptic interactions on neural function.
  • Enabled systematic mapping of intercellular signaling dynamics and cross-talk in vivo.

Conclusions:

  • Signaling connectomics challenges circuit-centric models by highlighting the importance of holistic intercellular communication.
  • This framework provides foundations for linking multicellular signaling to circuit plasticity and behavior.
  • Offers a new approach to understanding neural coordination and dysfunction.