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Correlating Gene-specific DNA Methylation Changes with Expression and Transcriptional Activity of Astrocytic KCNJ10 Kir4.1
Published on: September 26, 2015
DNA Methylation-Regulated ZDHHC24 Exacerbates the Risk of Intracranial Aneurysms
1Neurosurgery Center, Department of Cerebrovascular Surgery, Engineering Technology Research Center of Education Ministry of China on Diagnosis and Treatment of Cerebrovascular Disease, Zhujiang Hospital, Southern Medical University, Guangzhou, China.
Overexpression of the ZDHHC24 gene is linked to a higher risk of intracranial aneurysms (IAs). DNA methylation sites mediate this relationship, offering insights into IA pathogenesis.
Area of Science:
- Genetics and Molecular Biology
- Cardiovascular Research
- Neuroscience
Background:
- Palmitoylation is crucial for endothelial cell (EC) functions like angiogenesis and migration.
- The role of palmitoylation in intracranial aneurysms (IAs) and the impact of DNA methylation on IA-related genes remain understudied.
Purpose of the Study:
- To investigate the causal links between palmitoylation-related genes, DNA methylation, and IA development.
- To elucidate the underlying molecular mechanisms contributing to IA pathogenesis.
Main Methods:
- Employed Mendelian randomization (MR) methods, including two-sample MR and summary-data-based MR (SMR).
- Utilized mediation analysis and sensitivity analyses to validate findings.
- Conducted transcriptomic analysis to assess gene expression differences.
Main Results:
- ZDHHC24 gene overexpression showed a significant positive correlation with increased IA risk (21.85% increase per SD increase in expression).
- Specific DNA methylation sites (cg01806972, cg10523820, cg18862171, cg26041493) were identified as mediators in the ZDHHC24-IA relationship.
- Transcriptomic analysis confirmed statistically significant differential expression of ZDHHC24 in IA pathogenesis (p < 0.001).
Conclusions:
- ZDHHC24 overexpression is causally associated with an elevated risk of intracranial aneurysms.
- Specific DNA methylation loci mediate the effect of ZDHHC24 on IA development.
- Findings highlight the importance of palmitoylation-related gene expression and DNA methylation in IA susceptibility.
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