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Updated: Apr 29, 2026

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Culturing and Maintaining Clostridium difficile in an Anaerobic Environment
Published on: September 14, 2013
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Evaluation of endoscopic processing on the potential for Clostridiodes difficile transmission
D Ramkumar1, M Pezzone2, A Kinzler3
1Infectious Diseases and Microbiology Department, University of Pittsburgh School of Public Health, Pittsburgh, PA, USA.
Infection Prevention in Practice
|April 8, 2026
Summary
High-level disinfection (HLD) reduces but does not eliminate Clostridioides difficile (C. difficile) on colonoscopes. While C. difficile DNA may persist, negative cultures after HLD suggest a low transmission risk from asymptomatic patients.
Area of Science:
- Medical Microbiology
- Infectious Diseases
- Gastroenterology
Background:
- Clostridioides difficile (C. difficile) is a significant healthcare-associated infection, posing challenges due to its resilient spores.
- Endoscopes, particularly colonoscopes, are critical for diagnostics and therapeutics but require rigorous disinfection to prevent pathogen transmission.
- The efficacy of standard disinfection protocols against C. difficile on endoscopes remains a key concern in patient safety.
Purpose of the Study:
- To assess the effectiveness of high-level disinfection (HLD) in eliminating C. difficile from colonoscopes.
- To determine the prevalence of C. difficile colonization in patients undergoing colonoscopy.
- To investigate the presence of C. difficile toxin in patient samples.
Main Methods:
- A total of 100 colonoscopic procedures were analyzed.
- Colonoscopes were sampled before and after HLD using sterile water flushes.
- Quantitative polymerase chain reaction (qPCR) was employed to detect C. difficile DNA, complemented by aerobic cultures.
Main Results:
- C. difficile DNA was detected in 57.41% of pre-HLD samples and 48.39% of post-HLD samples.
- While cultures were negative post-HLD, qPCR indicated the presence of low levels of C. difficile DNA.
- A high prevalence of asymptomatic C. difficile colonization was observed in the patient population.
Conclusions:
- HLD significantly reduces C. difficile on colonoscopes but does not achieve complete elimination.
- The persistence of low levels of C. difficile DNA post-disinfection, with negative cultures, suggests a minimal risk of transmission.
- Routine screening for C. difficile colonization in asymptomatic patients undergoing colonoscopy may be warranted.

