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Updated: Jun 27, 2026

The Use of Reverse Phase Protein Arrays RPPA to Explore Protein Expression Variation within Individual Renal Cell Cancers
Published on: January 22, 2013
Network toxicology and single-cell transcriptomics nominate candidate pyrethroid-associated targets and pathways in
Fu Wen1,2, Dan Wei2, Wencai Wang3
1School of Clinical Medicine, Shandong Second Medical University, Weifang, 261053, China.
Abstract:
Pyrethroid insecticides are widely used in agricultural and domestic settings. Increasing evidence suggests that pyrethroid exposure may harm multiple organ systems and is associated with potential carcinogenicity. However, the mechanisms linking pyrethroids to clear cell renal cell carcinoma (ccRCC) remain unclear. Using an integrative framework combining network toxicology, single-cell sequencing-based analyses, and molecular docking, we investigated putative core targets and associated signaling pathways through which six prevalent pyrethroid active ingredients in household insecticides may be involved in ccRCC development. We retrieved 710 putative targets of pyrethroid insecticides from three in silico databases (SwissTargetPrediction, SEA, and TargetNet). In parallel, 2633 ccRCC-associated genes were collected from GeneCards and OMIM. Differential expression analysis of the GSE36895 dataset was then used for cross-validation, yielding 50 overlapping genes between pyrethroid-related targets and ccRCC. Functional enrichment suggested that these genes were primarily involved in pathways including chemokine signaling, IgSF cell adhesion molecule signaling, and the p53 signaling pathway. Utilizing three machine-learning algorithms, PNP and TYMS were prioritized as the most informative hub genes. Immune infiltration analyses further evaluated associations between these genes and immune cell populations, while single-cell transcriptomic analyses characterized their expression patterns and cellular distribution across ccRCC subtypes. Finally, molecular binding and in vitro experiments demonstrated that pyrethroid compounds enhance the expression of PNP and TYMS, thereby promoting the development of ccRCC. Overall, our research suggests that PNP and TYMS are candidate targets of pyrethroid insecticides involved in ccRCC, providing a mechanistic foundation for future targeted therapies.
Insights
Pyrethroid insecticides may promote clear cell renal cell carcinoma (ccRCC) by increasing PNP and TYMS gene expression. This research identifies potential therapeutic targets for ccRCC linked to pyrethroid exposure.
Area of Science:
- Toxicology
- Oncology
- Genomics
Background:
- Pyrethroid insecticides are common in agriculture and homes.
- Evidence links pyrethroid exposure to organ damage and potential cancer, but mechanisms for clear cell renal cell carcinoma (ccRCC) are unknown.
Purpose of the Study:
- Investigate how common pyrethroids in household insecticides contribute to ccRCC development.
- Identify core molecular targets and signaling pathways involved in pyrethroid-induced ccRCC.
Main Methods:
- Integrated network toxicology, single-cell sequencing, and molecular docking.
- Analyzed pyrethroid targets, ccRCC genes, and differential expression data (GSE36895).
- Utilized machine learning to prioritize hub genes (PNP, TYMS) and assessed immune infiltration and single-cell transcriptomics.
Main Results:
- Identified 50 overlapping genes between pyrethroid targets and ccRCC, enriched in chemokine signaling, cell adhesion, and p53 pathways.
- PNP and TYMS were prioritized as key hub genes.
- Pyrethroid compounds were shown to upregulate PNP and TYMS, promoting ccRCC development in vitro.
Conclusions:
- PNP and TYMS are identified as candidate targets for pyrethroid insecticides in ccRCC.
- This study provides a mechanistic basis for understanding pyrethroid-related ccRCC.
- Findings may inform future targeted therapies for ccRCC associated with pyrethroid exposure.
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