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Covalent Reprogramming of Kinase Binders to Modulate Protein Abundance.

Chen Mozes1, Xiaokang Jin1, Miguel A Campos1

  • 1Department of Chemistry, Northwestern University, Evanston, USA.

Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
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Summary

New covalent small molecules can reprogram protein abundance. One compound, MKI-AA, stabilizes Aurora kinase A (AURKA) by preventing its degradation, while structural changes can reverse this effect.

Keywords:
enzymeskinasesprotein degradersprotein stabilizersproteomics

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Area of Science:

  • Chemical Biology
  • Molecular Pharmacology
  • Proteomics

Background:

  • Small molecules modulating protein abundance offer alternatives to traditional inhibition.
  • Targeting protein degradation pathways is a growing area in drug discovery.

Purpose of the Study:

  • To explore how covalent modifications to a multi-kinase inhibitor scaffold affect protein abundance.
  • To investigate the mechanism by which MKI-AA stabilizes Aurora kinase A (AURKA).

Main Methods:

  • Synthesis of multi-kinase inhibitor analogs with electrophilic groups.
  • Quantitative proteomics to assess global protein abundance changes.
  • Biochemical assays to determine the mechanism of AURKA stabilization.

Main Results:

  • MKI-AA, a multi-kinase inhibitor with an acrylamide warhead, uniquely stabilizes AURKA.
  • MKI-AA acts post-translationally, inhibiting AURKA ubiquitination and proteasomal degradation.
  • Proteomic analysis revealed altered AURKA interactions upon MKI-AA treatment.
  • Structural modifications inverted MKI-AA's function from stabilization to degradation.

Conclusions:

  • Covalent small molecules can be designed to specifically modulate protein stability.
  • AURKA stabilization by MKI-AA offers a new therapeutic strategy.
  • Subtle structural changes can drastically alter the functional outcome of small molecules.