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CACTI: Leveraging Copy Masking and Contextual Information to Improve Tabular Data Imputation.

Aditya Gorla1,2, Ryan Wang3, Zhengtong Liu3

  • 1Department of Computational Medicine, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.

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|April 10, 2026
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Summary

We introduce CACTI, a novel approach for tabular data imputation that uses missingness patterns and feature descriptions. This method significantly improves data imputation accuracy across various missing data scenarios.

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Area of Science:

  • Machine Learning
  • Data Science
  • Artificial Intelligence

Background:

  • Tabular data imputation is crucial for data analysis and machine learning.
  • Existing methods often struggle with complex missingness patterns and lack of feature context.
  • Effective imputation enhances downstream task performance and data integrity.

Purpose of the Study:

  • To develop a novel masked autoencoding approach for tabular data imputation.
  • To leverage both missingness patterns and contextual feature information for improved imputation.
  • To outperform existing state-of-the-art imputation methods.

Main Methods:

  • CACTI (Contextual Autoencoding for Tabular Data Imputation) employs masked autoencoding.
  • A novel median truncated copy masking strategy is utilized during training.
  • Semantic relationships from column names and descriptions are incorporated to model feature dependence.

Main Results:

  • CACTI demonstrates superior performance across diverse datasets and missingness conditions.
  • Achieved an average R-squared gain of 7.8% over the next best method.
  • Outperformed methods by 13.4%, 6.1%, and 5.3% under missing not at random, at random, and completely at random scenarios, respectively.

Conclusions:

  • Leveraging dataset-specific contextual information and missingness patterns enhances imputation performance.
  • CACTI offers a robust and effective solution for tabular data imputation.
  • The proposed method provides a valuable tool for data scientists and machine learning practitioners.