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CardiaTics: An explainable AI integrated heart disease diagnosis model with feature engineering and stacked ensemble
1Department of Biological and Agricultural Engineering, Texas A&M University, College Station, 77843 Texas United States.
Insights
This study introduces CardiaTics, a stacked ensemble machine learning model for improved heart disease detection. It achieves 93.3% accuracy after feature selection, enhancing diagnostic reliability and interpretability.
Area of Science:
- Cardiology
- Machine Learning
- Data Science
Background:
- Heart disease is a major global health concern, necessitating accurate and timely diagnosis.
- Current diagnostic methods require improvement for effective prevention and management.
Purpose of the Study:
- To develop an advanced machine learning model, CardiaTics, for enhanced heart disease detection.
- To improve the accuracy and interpretability of machine learning models in cardiac diagnostics.
Main Methods:
- A stacked ensemble machine learning model (CardiaTics) was developed using ten individual algorithms.
- Data preprocessing involved outlier detection and removal.
- Feature engineering techniques including Pearson correlation, Chi-Square Test, and Recursive Feature Elimination were applied.
- SHapley Additive exPlanations (SHAP) and Explain Like I'm 5 (ELI5) were used for model interpretability.
Main Results:
- CardiaTics achieved 89.3% accuracy on raw data, improving to 93.3% after feature selection.
- The optimized model outperformed individual classifiers.
- SHAP analysis provided insights into feature importance, enhancing model transparency.
Conclusions:
- CardiaTics demonstrates superior performance in heart disease detection compared to individual models.
- The integration of interpretability methods (SHAP, ELI5) increases trust and reliability in the model's predictions.
- This approach offers a promising tool for refining clinical decision-making in cardiology.
Abstract:
Heart disease is a leading global cause of morbidity and mortality. Accurate and prompt diagnoses are crucial for its effective prevention and management. Integrating multiple machine learning algorithms, this research introduces a stacked ensemble machine learning model, called CardiaTics (stands for Cardiac DiagnosTics), toward improving heart disease detection. We detect outliers and remove them as a first-step to ensure data quality and maintain integrity. Ten distinct machine learning algorithms are then individually applied, culminating in the creation of a stacked ensemble model. We use feature engineering to refine the model further applying three well-known techniques -Pearson correlation, Chi-Square Test (Chi-2), and Recursive Feature Elimination. The implementation of these techniques on the benchmark dataset results in an optimized feature set. Experimental results show that CardiaTics delivers 89.3% accuracy on raw data, and significantly improves its accuracy after feature selection to 93.3%, outperforming the individual classifiers. However, can human professionals rely on algorithms for prediction when the underlying process is not fully understood? To address concerns regarding interpretability, trust, and transparency in black-box predictions, we propose utilizing SHapley Additive exPlanations (SHAP) and Explain Like I'm 5 (ELI5) in the second phase to elucidate feature importance in our model. The SHAP summary plots of CardiaTics reveal that the positive and negative contributors to heart disease are comparable, thereby enhancing the model's interpretability and reliability and helping refine the decision-making process.
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