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fix pimd/langevin: An efficient implementation of path integral molecular dynamics in LAMMPS
Yifan Li1, Axel Gomez1, Kehan Cai1
1Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA.
This study introduces an efficient Path Integral Molecular Dynamics (PIMD) implementation in LAMMPS, accelerating simulations of nuclear quantum effects. The new code, fix pimd/langevin, offers significant speedups for machine learning potentials, enhancing computational efficiency on parallel supercomputers.
Area of Science:
- Computational Chemistry
- Materials Science
- Quantum Mechanics
Background:
- Path Integral Molecular Dynamics (PIMD) is crucial for simulating nuclear quantum effects.
- Accurate PIMD requires many beads, making it computationally expensive.
- Existing PIMD software can be a bottleneck, especially with efficient machine learning potentials like Deep Potential (DP).
Purpose of the Study:
- To develop a highly efficient PIMD implementation within the LAMMPS framework.
- To leverage massively parallel supercomputing architectures for PIMD simulations.
- To accelerate PIMD calculations, particularly when using machine learning interatomic potentials.
Main Methods:
- Implementation of `fix pimd/langevin` in LAMMPS.
- Utilizing the Message Passing Interface (MPI) for parallelization.
- Validation using liquid water simulations and benchmarking against i-PI.
- Performance evaluation through strong and weak scaling tests.
Main Results:
- The new LAMMPS implementation (`fix pimd/langevin`) provides high computational efficiency.
- The code achieves several-fold acceleration compared to the i-PI software package for DP simulations of water.
- Demonstrated favorable parallel performance through strong and weak scaling.
Conclusions:
- The `fix pimd/langevin` module offers an efficient and scalable solution for PIMD simulations in LAMMPS.
- This implementation effectively captures nuclear quantum effects, especially when combined with machine learning potentials.
- The enhanced computational efficiency opens possibilities for more complex molecular simulations on modern supercomputers.
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