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Large Language Model Performance and Clinical Reasoning Tasks
Arya S Rao1,2, Kaiz P Esmail1,2, Richard S Lee1,2
1Harvard Medical School, Boston, Massachusetts.
JAMA Network Open
|April 13, 2026
Summary
Large language models (LLMs) show promise but struggle with full clinical reasoning, particularly differential diagnoses. While advanced models improve, they are not yet ready for safe clinical deployment due to reasoning gaps.
Area of Science:
- Artificial Intelligence in Medicine
- Clinical Decision Support Systems
- Natural Language Processing in Healthcare
Background:
- Large language models (LLMs) are increasingly marketed for clinical applications.
- Current evaluations using multiple-choice tests do not fully capture clinical reasoning complexity.
- The ability of LLMs to replicate full-spectrum clinical reasoning remains uncertain.
Purpose of the Study:
- To evaluate the longitudinal clinical reasoning ability of state-of-the-art LLMs.
- To introduce a multidimensional, clinically meaningful benchmark for clinical-grade artificial intelligence (AI).
Main Methods:
- A cross-sectional study evaluated 21 off-the-shelf LLMs using standardized clinical vignettes.
- Performance was assessed across five domains: differential diagnosis, diagnostic testing, final diagnosis, management, and miscellaneous reasoning.
- The Proportional Index of Medical Evaluation for LLMs (PrIME-LLM) score was the primary outcome measure.
Main Results:
- PrIME-LLM scores varied, with Grok 4 performing highest (0.78) and Gemini 1.5 Flash lowest (0.64).
- Reasoning-optimized models outperformed non-reasoning models; GPT models scored highest overall.
- Models struggled with differential diagnosis (failure rates >0.80) but excelled in final diagnosis (failure rates <0.40). Multimodal performance improved accuracy with image inputs.
Conclusions:
- Frontier LLMs demonstrate high accuracy in final diagnoses but exhibit significant weaknesses in differential diagnosis and managing uncertainty.
- The PrIME-LLM framework reveals critical reasoning gaps not apparent with traditional benchmarks.
- Despite improvements, current LLMs lack the advanced clinical reasoning necessary for safe deployment.
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