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Direct Comparison of Constitutive Rax-Cre Transgenic Drivers That Activate in the Mouse Embryonic Eye Field.
Nadean L Brown1, Samuel Goodyear-Brown2, Sabine Fuhrmann2,3
1Department of Cell Biology & Human Anatomy, University of California, Davis, California, United States.
Investigative Ophthalmology & Visual Science
|April 15, 2026
Summary
This study compares two Cre mouse lines, Rx3-Cre and Rax-Cre BAC, for tracking eye development. Rax-Cre BAC accurately models RAX expression, while Rx3-Cre shows broader activity, including off-target sites.
Area of Science:
- Developmental biology
- Genetics
- Ophthalmology
Background:
- The Rax/Rx gene is crucial for early eye development, with its expression progressively restricted.
- Constitutive Cre recombinase mouse lines, Rx3-Cre and Rax-Cre BAC Tg, are utilized by vision researchers to study Rax/Rx gene function.
- Understanding the precise Cre activity of these lines is essential for accurate lineage tracing in ocular development.
Purpose of the Study:
- To directly compare the prenatal ocular and extraocular Cre activities of Rx3-Cre and Rax-Cre BAC transgenic mouse lines.
- To evaluate the utility of these Cre drivers for studying embryonic and postnatal eye development.
- To inform the use of these tools in modeling congenital eye diseases.
Main Methods:
- Mating Rx3-Cre or Rax-Cre BAC transgenic male mice with Cre-dependent lineage tracer Ai9/tdTomato mice.
- Evaluating live and fixed tissue expression at multiple developmental stages, from optic vesicle onward.
- Imaging of whole embryos and immunolabeled cryosectioned material.
Main Results:
- Rx3-Cre recapitulates endogenous RAX expression but shows unexpected Cre activity in periocular mesenchyme and potential germline expression.
- Rax-Cre BAC driver accurately recapitulates endogenous RAX expression in the embryonic and postnatal eye, with minor unexpected limb expression.
- Both lines demonstrate Cre activity in optic vesicle-derived tissues.
Conclusions:
- A systematic analysis of Rx3-Cre and Rax-Cre BAC drivers during eye development is provided.
- These Cre drivers are valuable for recapitulating severe congenital eye diseases.
- Lineage reporting and littermate controls are strongly recommended when using conditional targeting strategies for optic vesicle-derived tissues.

