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Adapting frozen foundation models for montage-agnostic high-resolution EEG event segmentation
Jun Ma1, Tuukka Ruotsalo2,3
1Department of Computer Science, University of Helsinki, Helsinki, Finland.
Journal of Neural Engineering
|April 17, 2026
Summary
This study introduces a novel method for brain-computer interfaces (BCIs) that adapts frozen EEG foundation models for event detection across different electrode setups without recalibration, improving real-world applicability.
Area of Science:
- Neuroscience
- Biomedical Engineering
- Machine Learning
Background:
- Deploying brain-computer interfaces (BCIs) outside labs requires robust neural event detection in electroencephalography (EEG) despite varying electrode montages and without time-locked synchronization.
- Existing EEG foundation models often struggle with generalization across different hardware and datasets, necessitating subject-specific calibration.
Purpose of the Study:
- To investigate the adaptability of frozen EEG foundation models for high-temporal-resolution event segmentation in continuous EEG.
- To enable generalization across diverse electrode montages and datasets without requiring subject-specific calibration.
- To develop a practical and resource-efficient BCI framework for lab-to-field deployment.
Main Methods:
- Introduced a lightweight, parameter-efficient preprocessing layer for interpolating channel embeddings based on electrode coordinates.
- Enabled frozen foundation models to accept arbitrary EEG montages via a plug-in adapter.
- Attached a shallow segmentation head for 4ms temporal resolution labeling and used sliding-window majority voting for prediction consolidation.
Main Results:
- Achieved a mean macro F1 of 0.492 and IoU of 0.361 in cross-subject evaluation across eight public corpora (P300, SSVEP, MI paradigms).
- Demonstrated calibration-free cross-dataset generalization with F1=0.462 and IoU=0.319.
- Outperformed original foundation models (BIOT, EEGPT) and classical baselines (EEGNet).
Conclusions:
- The proposed framework effectively decouples electrode montage from feature extraction, allowing pre-trained models to be used without retraining.
- Enables practical, resource-efficient BCIs that operate without time-locked synchronization or montage-specific calibration.
- Lays the groundwork for bridging the gap between laboratory BCI research and real-world field applications.

