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The scale-up of microbial fermentation processes is essential in industrial biotechnology, allowing the transition from laboratory-scale experiments to commercial-scale production while aiming to maintain product yield and quality. This process requires meticulous adjustment of equipment design, process parameters, and contamination control strategies to accommodate increasing culture volumes.At the laboratory scale, cultures are typically maintained in 1 to 10-liter glass or autoclavable...
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Bioreactors are engineered vessels designed to cultivate microorganisms under controlled conditions for industrial bioprocessing. They maintain sterility and allow precise regulation of pH, temperature, oxygen, and nutrient levels to optimize microbial growth and metabolite production. Bioreactors range from small laboratory units of 1 liter to industrial systems holding up to 500,000 liters, though only about 75% of their volume is actively used for fermentation. The remaining headspace...
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In aerobic fermentations, oxygen is vital for microbial growth and metabolite production. Since air comprises only about 20% oxygen and the gas is poorly soluble in water—just 9 ppm at 20°C—supplying sufficient oxygen becomes a critical challenge, especially in high-demand processes like yeast growth or citric acid production. Even a fully saturated broth may offer only a few seconds of oxygen availability.To address this, sterile or scrubbed air is introduced into the...
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Batch vs Continuous Culture01:14

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Fermentation is a foundational biotechnological process used to produce pharmaceuticals, biofuels, enzymes, and food additives. Among industrial strategies, batch and continuous fermentation are the two most widely applied. Although both rely on microbial conversion of substrates into desired products, they differ markedly in operation, productivity, and suitability for specific applications.Batch fermentation occurs in a closed system in which nutrient media and inoculum are added at the...
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Upstream Processing01:27

Upstream Processing

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Upstream processing represents a critical phase in biomanufacturing, wherein biological systems such as microorganisms, mammalian cells, or insect cells are cultivated to produce therapeutic proteins, vaccines, enzymes, or other biologically derived products. This phase encompasses all steps from the selection and genetic manipulation of the production organism to the cultivation of cells in bioreactors under tightly controlled environmental conditions.Host Selection and Genetic OptimizationThe...
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Growth media provide essential nutrients that support cell growth and metabolism, thereby enhancing the yield of valuable products such as enzymes, antibiotics, and biomass. Designing an effective growth medium involves balancing all components to prevent nutrient limitations or toxic excesses, both of which can impair growth and reduce product yields.Composition of a Typical Growth MediumA typical growth medium contains carbon and nitrogen sources, salts, vitamins, trace elements, and...
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A Scalable Balz-Schiemann Reaction Protocol in a Continuous Flow Reactor
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Scalable Flow Reactors for Stable Biofilm Formation and Continuous Whole-Cell Catalysis.

Sarah Gliemann1, Laurenz Michael-Bela Walkowsky1, Dario Mager2

  • 1Institute for Biological Interfaces 1 (IBG-1), Biomolecular Micro- and Nanostructures, Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany.

Small (Weinheim an Der Bergstrasse, Germany)
|April 18, 2026
PubMed
Summary

This study presents a microfluidic reactor for stable, continuous whole-cell biocatalysis. The flow-induced deposition method creates robust biofilms, enabling long-term catalytic activity for 28 days.

Keywords:
continuous bioprocessingextracellular DNAflow‐induced depositionmicrofluidic biofilmsreactor scalingwhole‐cell biocatalysis

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Area of Science:

  • Biotechnology
  • Chemical Engineering
  • Microfluidics

Background:

  • Stable biofilms are crucial for continuous whole-cell biocatalysis but are difficult to control.
  • Existing methods face challenges in controlled formation and long-term operation.

Purpose of the Study:

  • To develop a scalable microfluidic reactor platform for robust biofilm formation using flow-induced deposition.
  • To understand the role of microscale hydrodynamics and extracellular DNA in biofilm architecture and stability.

Main Methods:

  • Systematic scaling of microfluidic reactor geometries.
  • Computational fluid dynamics simulations to analyze flow patterns.
  • Fluorescence microscopy and enzymatic treatment to study biofilm structure and composition.

Main Results:

  • Demonstrated successful generation of stratified biofilms enriched in extracellular DNA.
  • Identified extracellular DNA as critical for initial biofilm matrix assembly.
  • Achieved stable, catalytically active biofilms for at least 28 days under continuous flow.

Conclusions:

  • Flow-structured microreactors offer a generalizable strategy for hydrodynamically controlled biofilm engineering.
  • This approach links microscale flow fields to biofilm stability and catalytic function.
  • Provides a foundation for scalable continuous whole-cell biocatalysis.