Time-resolved single-cell transcriptomics maps zebrafish heart development

Cardiac development is a process where bilateral precursors come together to form a tube that matures into a complex multi-chambered organ. Despite advances in single-cell RNA sequencing technology, a comprehensive analysis of zebrafish heart development from early to late stages is still lacking. We profiled over 34,000 cells from zebrafish hearts spanning ten developmental stages from 25 h to 60 days post-fertilization. We identified and subclustered all known cardiac cell types, revealing distinct proliferation dynamics and uncovering an additional peak in cardiomyocyte proliferation at 14 days post-fertilization. We analyzed the cardiac interactome, focusing on ligand-receptor interactions between the myocardium and endocardium. By investigating later stages, we discovered several marker genes that are enriched in compact or trabecular layer cardiomyocytes including bcam, kcnj14, and kcnj5. We also identified kcnj3b as a specific pacemaker gene. This zebrafish heart atlas enhances our understanding of vertebrate heart development and represents a valuable resource for future studies.