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Discovery of Naphthyridinone Derivatives as Selective PKMYT1/WEE1 Dual Inhibitors for Cancer Therapy
Bo Chen1, Xiaofeng Liu1, Jiasu Xu1
1Medicinal Chemistry, China Innovation Center of Roche, Shanghai 201203, China.
Abstract:
Dual inhibition of PKMYT1 and WEE1, key G2/M checkpoint kinases that phosphorylate CDK1 at T14 and Y15, offers a strategy for tumors with abrogated G1/S checkpoint and high replication stress. Building on our prior PKMYT1 chemotype, we designed 1,7-naphthyridinone derivatives by displacing crystallographic water (core 5'-N-Asp251) and adding a 7'-ring nitrogen to retain physicochemical properties. 5'-Site structure fine-tuning enhanced WEE1 engagement while preserving the PKMYT1-preferred hinge flip and superior kinome selectivity. Optimization identified compound 24 with single-digit nM PKMYT1 NanoBRET and sub-μM WEE1 NanoBRET potency, translating to pCDK1 T14 IC50 4.9 nM and pCDK1 Y15 0.186 μM in HCC1569 cells. Kinome profiling confirmed favorable selectivity. In colorectal cancer organoids, 24 outperformed our prior PKMYT1 inhibitor (6), RP-6306, and WEE1 inhibitor AZD1775, with efficacy correlating to improved WEE1 activity. Compound 24 also showed favorable in vitro ADME and early safety profiles, supporting dual checkpoint targeting in checkpoint-deficient cancers.
Insights
We developed a novel dual inhibitor targeting PKMYT1 and WEE1 kinases, showing promise for treating cancers with deficient cell checkpoints. This compound demonstrates potent activity and favorable safety profiles in preclinical models.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- PKMYT1 and WEE1 are key G2/M checkpoint kinases regulating CDK1 phosphorylation.
- Dual inhibition is a potential strategy for tumors with G1/S checkpoint defects and high replication stress.
Purpose of the Study:
- To design and optimize novel dual inhibitors of PKMYT1 and WEE1 kinases.
- To evaluate the efficacy and safety of a lead compound in preclinical cancer models.
Main Methods:
- Structure-based drug design and synthesis of 1,7-naphthyridinone derivatives.
- Biochemical assays (NanoBRET) for kinase inhibition and cellular assays for target engagement (pCDK1 T14/Y15).
- Kinome profiling, organoid efficacy studies, and in vitro ADME/safety assessments.
Main Results:
- Compound 24 exhibited potent inhibition of PKMYT1 (nM) and WEE1 (sub-μM) with high selectivity.
- 24 effectively reduced pCDK1 T14 and Y15 phosphorylation in cancer cells.
- In colorectal cancer organoids, 24 demonstrated superior efficacy compared to existing inhibitors and favorable in vitro ADME/safety.
Conclusions:
- Compound 24 is a potent dual PKMYT1/WEE1 inhibitor with a promising preclinical profile.
- Dual checkpoint targeting represents a viable therapeutic strategy for checkpoint-deficient cancers.
- Further development of 24 is warranted for clinical investigation.
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