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Updated: Apr 21, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Predicting Dietary Impact on Multiple Sclerosis-Related Symptoms With the Gut Microbiome: A Pilot Study Using
Leeann Aguilar Meza1, Rachel L Fitzjerrells2,3, Farnoosh Shemirani4
1Holden Comprehensive Cancer Center, University of Iowa, Iowa City, Iowa, USA.
Gut bacteria may predict how people with multiple sclerosis (MS) respond to dietary changes like the modified Paleolithic elimination (MPE) and low-saturated fat (LSF) diets. Specific microbes at the start of the diet were linked to improvements in fatigue and quality of life.
Area of Science:
- Microbiome research
- Neuroimmunology
- Nutritional science
Background:
- Multiple sclerosis (MS) is a neurodegenerative condition.
- Dietary interventions, including the modified Paleolithic elimination (MPE) and low-saturated fat (LSF) diets, show promise in managing MS symptoms.
- The mechanisms by which diet influences outcomes in MS, particularly through the gut microbiota, are not well understood.
Purpose of the Study:
- To investigate the role of baseline gut microbiota in predicting treatment response to dietary interventions in people with MS (pwMS).
- To explore the relationship between specific gut microbial profiles and improvements in fatigue and quality of life (QoL) in pwMS undergoing dietary changes.
Main Methods:
- Fecal 16S rRNA sequencing was used to analyze the gut microbiome composition in pwMS.
- Topic modeling, a machine learning approach, was applied to identify predictive microbial features from baseline samples.
- The study included pwMS on either the MPE diet (n=11) or the LSF diet (n=12), with combined analysis of the cohort (n=23).
Main Results:
- Significant changes in specific bacterial genera were observed on both MPE and LSF diets over time.
- Baseline enrichment of Akkermansia, Bacteroides, and Barnesiella predicted a positive response in fatigue levels.
- An initial abundance of Faecalibacterium and Alistipes was associated with a lack of improvement in Mental QoL.
Conclusions:
- Baseline gut microbiota composition can predict improvements in fatigue and Mental QoL in pwMS undergoing dietary interventions.
- These findings underscore the potential of the gut microbiome in personalized nutrition strategies for MS management.
- Further large-scale mechanistic studies are needed to validate these hypothesis-generating results.
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