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Evaluating data heterogeneity's impact on convolutional neural network performance in medical imaging.

John Valen1, Lucie Yang1, Jacob Levman2,3

  • 1Department of Medical Imaging, University of Toronto, Toronto, ON, M5T 1W7, Canada.

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Summary

Data heterogeneity in medical imaging negatively impacts machine learning model performance. Increasing training data size and using feature-driven clustering enhance model reliability for computer-aided diagnostics.

Keywords:
GeneralizabilityHeterogeneityMedical imagingNeural network

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Area of Science:

  • Medical Imaging Analysis
  • Machine Learning in Healthcare
  • Computer-Aided Diagnostics

Background:

  • Data heterogeneity, the variation in medical data across sources, is a significant challenge in machine learning in medical imaging (MIML).
  • This heterogeneity impacts the generalizability and reliability of diagnostic models.
  • Understanding its influence is crucial for clinical applicability.

Purpose of the Study:

  • To investigate the impact of data heterogeneity on the performance of convolutional neural networks (CNNs) in medical imaging.
  • To provide insights into optimizing MIML model reliability and clinical applicability across diverse datasets.
  • To explore methods for quantifying and mitigating heterogeneity's effects.

Main Methods:

  • Evaluated heterogeneity's effect using five medical imaging datasets with varying pathologies.
  • Employed CNNs for feature extraction and clustering to identify internal data groupings.
  • Assessed model performance using k-fold cross-validation, measuring inter-cluster distances and key performance indicators like accuracy and F1 score.

Main Results:

  • Higher inter-cluster distances (indicating greater heterogeneity) correlated with decreased model performance and increased variability.
  • Increasing training set size reduced inter-cluster distance and improved accuracy and F1 scores.
  • CNN-derived feature clusters exhibited performance variability linked to feature-space organization, distinct from random clusters.

Conclusions:

  • Addressing data heterogeneity is critical for robust and generalizable MIML systems.
  • Larger training datasets and feature-driven clustering enhance model consistency and reliability.
  • Explicitly modeling heterogeneity is key to developing dependable computer-aided diagnostic tools for clinical use.