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Modeling Somitogenesis and Axial Development In Vitro with Axioloids
Keun-Tae Kim1, Sofiane Hamidi1, Cantas Alev2
1Institute for the Advanced Study of Human Biology (ASHBi), Kyoto University, Kyoto, Japan.
Methods in Molecular Biology (Clifton, N.J.)
|April 22, 2026
Summary
Axioloids, 3D stem cell models, mimic human somitogenesis and axial development in vitro. This protocol details their generation for studying developmental disorders.
Area of Science:
- Developmental Biology
- Stem Cell Biology
- Regenerative Medicine
Background:
- Human somitogenesis and axial development are complex processes difficult to study in vivo.
- Pluripotent stem cells (PSCs) offer a promising avenue for in vitro modeling.
- Axioloids are novel 3D structures derived from PSCs that recapitulate key developmental events.
Purpose of the Study:
- To provide a detailed protocol for generating axioloids from PSCs.
- To establish axioloids as a robust in vitro model for human axial development.
- To facilitate the study of congenital disorders affecting the spine and axial skeleton.
Main Methods:
- Derivation of axioloids from pluripotent stem cells (PSCs).
- Characterization of axioloids for key developmental features: axial elongation, somite formation, rostrocaudal patterning, segmentation clock activity, signaling gradients (FGF/WNT, retinoic acid), and HOX gene expression.
- In vitro recapitulation of somitogenesis and early axis development.
Main Results:
- Axioloids successfully model human somitogenesis and early axial development in vitro.
- These 3D structures exhibit essential morphogenetic features, including epithelial somite formation and rostrocaudal patterning.
- Axioloids reproduce in vivo-like spatiotemporal signaling gradients and HOX gene expression patterns.
Conclusions:
- Axioloids represent a versatile and reproducible platform for studying human axial development.
- This model system is valuable for investigating congenital disorders of the spine and axial skeleton.
- The provided protocol enables standardized generation and characterization of axioloids for research purposes.

