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Related Experiment Video

Updated: Apr 24, 2026

Quantification of Information Encoded by Gene Expression Levels During Lifespan Modulation Under Broad-range Dietary Restriction in C. elegans
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Maximizing efficiency of dataset compression for machine learning potentials with information theory.

Benjamin Yu1, Vincenzo Lordi2, Daniel Schwalbe-Koda1

  • 1Department of Materials Science and Engineering, University of California, Los Angeles, California 90095, USA.

The Journal of Chemical Physics
|April 23, 2026
PubMed
Summary
This summary is machine-generated.

We developed an efficient algorithm for compressing atomistic datasets, preserving crucial information and improving machine learning interatomic potential (MLIP) accuracy. This method optimizes training data for better MLIP performance and reliability.

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Area of Science:

  • Computational materials science
  • Machine learning in chemistry and physics

Background:

  • Machine learning interatomic potentials (MLIPs) offer a balance between accuracy and computational cost for materials simulations.
  • MLIP performance is highly dependent on the size and diversity of training datasets, with challenges in managing large datasets or ensuring adequate representation in smaller ones.

Purpose of the Study:

  • To develop an information-theoretical framework and algorithm for efficient atomistic dataset compression.
  • To identify the smallest subset of structures that maximizes information retention and prunes redundancy.

Main Methods:

  • Framing dataset compression as a minimum set cover (MSC) problem over atom-centered environments.
  • Developing an algorithm to efficiently solve the MSC problem for atomistic datasets.
  • Validating the MSC approach on multiple datasets, including GAP-20, TM23, and the ColabFit repository.

Main Results:

  • The MSC method effectively retains outliers and preserves dataset diversity, even at high compression rates.
  • MLIPs trained on MSC-compressed datasets show reduced error for out-of-distribution data, especially in low-data regimes.
  • The MSC approach outperforms conventional subsampling and dimensionality reduction methods in preserving dataset information and improving MLIPs.

Conclusions:

  • The developed MSC algorithm provides an efficient and effective method for atomistic dataset compression.
  • This approach enhances the accuracy and reliability of MLIPs by optimizing training data selection.
  • The QUESTS package implementation facilitates broader application in atomistic modeling, including data subsampling and outlier detection.