Metabolic reprogramming and signalling networks in microglial activation: Implications for neurodegeneration
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Updated: Apr 26, 2026

Isolation of Cortical Microglia with Preserved Immunophenotype and Functionality From Murine Neonates
Published on: January 30, 2014
Mohsine-Ali El-Hamri1, Oualid Abboussi2
1Physiology and Physiopathology Team, Faculty of Sciences, Mohammed V University in Rabat, Morocco; Department of Medical Genetics, National Institute of Hygiene, Rabat, Morocco; Research Team in Genomics and Molecular Epidemiology of Genetic Diseases, Genopath Centre, Faculty of Medicine and Pharmacy of Rabat, University Mohammed V, Rabat, Morocco.
Abstract:
Microglia, the brain's innate immune cells, undergo a complex activation process characterized by metabolic reprogramming and inflammatory signalling that transcends the classical M1/M2 polarization framework. Recent advances in single-cell technologies have unveiled remarkable microglial heterogeneity, including the emergence of disease-associated microglia (DAM), which play critical roles in neurodegeneration. This study synthesizes recent findings from single-cell transcriptomics, spatial proteomics, and metabolomics to provide an integrated perspective on microglial activation. We focus on the interplay between key metabolic pathways, including glycolysis, the pentose phosphate pathway, and oxidative phosphorylation, as well as inflammatory signalling networks such as NF-κB, HIF-1α, and JAK/STAT, across diverse neurodegenerative conditions. Our synthesis reveals that microglial activation is driven by coordinated metabolic and inflammatory reprogramming, forming self-reinforcing cycles that sustain neuroinflammation. Disease-associated microglia display unique transcriptional profiles distinct from traditional polarization states, with notable regional and sex-specific variations in activation patterns. Crucially, crosstalk between the HIF-1α and NF-κB pathways modulated by metabolic sensors like CARKL underpins persistent inflammatory responses. Additionally, researchers have identified novel neuroprotective mechanisms, including mitochondrial transfer from microglia to neurons via tunneling nanotubes. Importantly, chronic neuroinflammation in neurodegenerative diseases appears to arise not from persistent microglial activation per se, but from failures in inflammatory resolution. Viewing microglial activation as an integrated metabolic-inflammatory network highlights new therapeutic avenues. While metabolic inhibitors hold conceptual promise, their clinical infeasibility necessitates a paradigm shift toward TREM2 immunomodulators and resolution agonizts with established human safety profiles. Strategies targeting metabolic reprogramming, enhancing resolution pathways, and promoting beneficial microglial-neuronal interactions hold promise for treating neurodegenerative disorders. Furthermore, identifying biomarkers of microglial activation states may enable the development of personalized therapeutic approaches.
Insights
Microglia activation involves metabolic and inflammatory changes, creating disease-associated microglia (DAM) in neurodegeneration. Therapeutic strategies should focus on enhancing resolution pathways and beneficial microglial-neuronal interactions.
Area of Science:
- Neuroimmunology
- Cellular Metabolism
- Neurodegeneration
Background:
- Microglia, the brain's immune cells, exhibit complex activation beyond M1/M2 states.
- Single-cell technologies reveal microglial heterogeneity, including disease-associated microglia (DAM) in neurodegeneration.
Purpose of the Study:
- To synthesize findings on microglial activation, focusing on metabolic and inflammatory interplay.
- To provide an integrated perspective on microglial roles in neurodegenerative diseases.
Main Methods:
- Review of single-cell transcriptomics, spatial proteomics, and metabolomics data.
- Analysis of metabolic pathways (glycolysis, PPP, OXPHOS) and inflammatory networks (NF-κB, HIF-1α, JAK/STAT).
Main Results:
- Microglial activation is driven by coordinated metabolic and inflammatory reprogramming, forming self-reinforcing cycles.
- Disease-associated microglia (DAM) show distinct profiles with regional and sex-specific variations.
- Crosstalk between HIF-1α and NF-κB pathways, modulated by metabolic sensors, drives persistent inflammation.
Conclusions:
- Chronic neuroinflammation stems from failed resolution, not just persistent activation.
- Therapeutic strategies should shift towards TREM2 immunomodulators and resolution agonists.
- Targeting metabolic reprogramming and promoting neuroprotective mechanisms offers potential for treating neurodegenerative disorders.

