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Published on: August 23, 2024
A microRNA expression signature in infant t(4;11) KMT2A::AFF1+ BCP-ALL uncovers novel therapeutic targets
Camille Malouf1, Alasdair Duguid1, Kirsten S Vrenken2
1Centre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Insights
Three microRNAs (miR-194, miR-99b, miR-125a-5p) show promise in treating KMT2A::AFF1+ B-cell precursor acute lymphoblastic leukemia (BCP-ALL). Drug repurposing targeting their upregulated genes reduced leukemia burden in vivo, offering new therapeutic strategies.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Infants and children with KMT2A::AFF1+ leukemia face poor prognoses, necessitating novel therapies.
- MicroRNAs play crucial roles in cancer development and progression.
Purpose of the Study:
- To investigate the role of downregulated microRNAs (miR-194, miR-99b, miR-125a-5p) in KMT2A::AFF1+ B-cell precursor acute lymphoblastic leukemia (BCP-ALL).
- To identify therapeutic targets and explore drug repurposing for KMT2A::AFF1+ BCP-ALL.
Main Methods:
- Overexpression of miR-194, miR-99b, and miR-125a-5p in KMT2A::AFF1+ BCP-ALL cells.
- Identification of upregulated microRNA target genes (CA5B, PPP3CA, PPP2R5C) in KMT2A::AFF1+ BCP-ALL.
- Drug repurposing screen using acetazolamide, tacrolimus, and LB-100 to inhibit target genes.
- In vivo studies using patient-derived xenotransplant models.
Main Results:
- Overexpression of the three microRNAs reduced KMT2A::AFF1+ leukemic blast survival and BCP-ALL maintenance.
- Inhibition of CA5B, PPP3CA, and PP2A by repurposed drugs demonstrated high toxicity against KMT2A::AFF1+ leukemic blasts.
- Acetazolamide reduced leukemia burden in vivo and prolonged survival in patient-derived xenotransplant models when combined with standard therapy.
Conclusions:
- The unique microRNA signature in KMT2A::AFF1+ BCP-ALL can identify novel therapeutic targets.
- Drug repurposing of acetazolamide, tacrolimus, and LB-100 shows potential for treating KMT2A::AFF1+ BCP-ALL.
- Combination therapy with repurposed drugs may offer a less toxic treatment approach for infant ALL.
Abstract:
Infants and children with KMT2A::AFF1+ leukemia have a dismal prognosis and are therefore in urgent need for more efficient and less aggressive therapy. In this study, we investigated three microRNAs that are downregulated in KMT2A::AFF1+ B-cell precursor acute lymphoblastic leukemia (BCP-ALL): miR-194, miR-99b, and miR-125a-5p. When overexpressed, all three microRNAs impaired the survival of KMT2A::AFF1+ leukemic blasts and the maintenance of KMT2A::AFF1+ BCP-ALL. We identified microRNA target genes responsible for this phenotype that are upregulated in KMT2A::AFF1+ BCP-ALL: CA5B, PPP3CA, and PPP2R5C. Importantly, using a drug-repurposing approach, we found that inhibition of CA5B, PPP3CA, and PP2A by acetazolamide, tacrolimus, and LB-100, respectively, showed high toxicity toward KMT2A::AFF1+ leukemic blasts and reduced leukemia burden in vivo. Furthermore, acetazolamide was able to prolong the survival of patient-derived xenotransplant models in combination with infant ALL induction therapy. This study highlights how the unique microRNA expression signature of patients with KMT2A::AFF1+ BCP-ALL can be used to uncover novel therapeutic avenues and accelerate drug repurposing. It also indicates potential new drug combinations for less toxic chemotherapy.
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