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Dynamic Proteomic and miRNA Analysis of Polysomes from Isolated Mouse Heart After Langendorff Perfusion
Published on: August 29, 2018
Transcriptome Analysis Identifies Proteostasis and Cell Survival Pathway Disruption in Peripartum Cardiomyopathy,
Pooja Choubey1, Vanessa Montoya-Uribe2, Michelle L Matter1
1The Lundquist Institute for Biomedical Innovation, Harbor-UCLA Medical Center, Torrance, CA 90502, USA.
Insights
Peripartum cardiomyopathy (PPCM) results from pregnancy stress overwhelming heart adaptation. This study reveals PPCM involves failed protein quality control and impaired translation, offering new therapeutic targets for heart failure.
Area of Science:
- Cardiology
- Molecular Biology
- Genomics
Background:
- Peripartum cardiomyopathy (PPCM) is a rare but serious form of heart failure during late pregnancy or postpartum.
- The precise molecular mechanisms linking pregnancy stress to cardiomyocyte dysfunction in PPCM are not fully understood.
Purpose of the Study:
- To investigate the molecular pathways involved in PPCM using transcriptome-wide RNA sequencing.
- To identify key genes and signaling pathways contributing to PPCM pathogenesis.
Main Methods:
- RNA sequencing of left ventricles from PPCM patients and healthy controls.
- Differential gene expression analysis and Ingenuity Pathway Analysis (IPA).
- Upstream regulator and integrated network analyses.
Main Results:
- Identified 2891 differentially expressed genes in PPCM ventricles.
- Revealed activation of protein ubiquitination, EIF2 signaling, mitochondrial dysfunction, and apoptosis pathways.
- Highlighted suppression of CLPP and activation of COPS5 and TEAD1, indicating disrupted proteostasis and translational control.
Conclusions:
- PPCM is characterized by a collapse of proteostasis and impaired translational homeostasis.
- Findings suggest potential therapeutic targets in mitochondria, protein quality control, integrated stress response, and COP9 signaling pathways.
Abstract:
Peripartum cardiomyopathy (PPCM) is a pregnancy-associated form of systolic heart failure that develops when hemodynamic, metabolic, and hormonal stress of late gestation exceeds maternal cardiac adaptive capacity. While vascular, inflammatory, and genetic contributions have been implicated in PPCM, the integrated molecular programs connecting pregnancy-related stress to cardiomyocyte failure remain poorly defined. To elucidate these mechanisms, we performed a transcriptome-wide RNA seq of left ventricles from females with PPCM and non-failing female normal donor controls. Differential expression analysis identified 2891 genes with altered expressions (1491 upregulated, 1400 downregulated; fold change ≥ 2, FDR < 0.05). Ingenuity pathway analysis (IPA) revealed the activation of protein ubiquitination pathways, EIF2 signaling, mitochondrial dysfunction, and apoptosis pathways. Upstream regulator analysis indicated the suppression of mitochondrial protease CLPP (Z = -4.075) and activation of COPS5 (Z = +5.982) and TEAD1 (Z = +5.00), delineating dual regulatory modules of disease remodeling. Integrated network analysis demonstrated a loss of protein quality control and survival signaling with the activation of stress response and translational repression programs. This signifies a collapse of proteostasis and maladaptive adaptation. Collectively, these data define PPCM as a disorder of failed proteostasis and impaired translational homeostasis. Our analysis provides a systems-level framework connecting PPCM to ventricular dysfunction with potential therapeutic targets in mitochondria, protein quality-control, integrated stress-response, and COP9 signaling pathways.
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