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Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
Published on: September 17, 2017
Structural studies of an antinecroptosis viral:human functional heteroamyloid M45:RIPK3 using SSNMR
Chengming He1, Nikhil R Varghese2,3, Eric G Keeler1
1Department of Chemistry, Columbia University, New York, NY 10027.
Abstract:
The formation of RIP-homotypic interaction motif (RHIM)-based heteromeric amyloid assemblies between effector proteins such as receptor-interacting protein kinases 1, Z-DNA Binding Protein 1, or TRIF and the kinase RIPK3 serves as regulating signals for the necroptosis process, a key element of innate immune defense. Murine cytomegalovirus expresses the M45-encoded viral inhibitor of RIP activation which inhibits necroptosis in a RHIM-dependent manner. A pivotal question is how viral M45 forms heteroamyloids with RIPK3 to effectively create an inhibitory assembly. We report a high-resolution structure of the M45:RIPK3 complex where M45 and RIPK3 alternately stack in an amyloid-state structure. Mutagenesis of the residues flanking the IQIG tetrad in M45 results in specific impacts on coassembly with RIPK3, indicating an extended interface in the heteromeric fibrils. Other key interactions support the formation of stable viral:host fibrils. The M45:RIPK3 heteroamyloid is likely to act as an antinecroptotic signal by competing with formation of other pronecroptotic species and introducing a barrier to RIPK3 autophosphorylation.
Insights
Viral M45 protein inhibits necroptosis by forming amyloid assemblies with RIPK3. This study reveals the high-resolution structure of the M45:RIPK3 complex, detailing how these viral and host proteins coassemble to block immune signaling.
Area of Science:
- Immunology
- Structural Biology
- Virology
Background:
- Necroptosis is a crucial innate immune defense mechanism regulated by RIP-homotypic interaction motif (RHIM)-based amyloid assemblies.
- Viral proteins, like murine cytomegalovirus's M45, can inhibit necroptosis through RHIM-dependent mechanisms.
Purpose of the Study:
- To elucidate the structural basis of how viral M45 protein forms heteroamyloids with the host kinase RIPK3.
- To understand the molecular mechanism by which M45:RIPK3 assemblies inhibit necroptosis.
Main Methods:
- High-resolution structural analysis of the M45:RIPK3 complex.
- Site-directed mutagenesis to investigate the role of specific residues in M45 during coassembly.
Main Results:
- The M45:RIPK3 complex forms an alternating amyloid-state structure.
- Mutagenesis studies identified an extended interface critical for heteromeric fibril formation.
- Key interactions stabilize these viral:host amyloid fibrils.
Conclusions:
- The M45:RIPK3 heteroamyloid acts as an antinecroptotic signal by preventing pronecroptotic complex formation and RIPK3 autophosphorylation.
- This structural insight provides a mechanism for viral evasion of host innate immunity.
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