Pleiotropic germline PTEN mutations influence gastrulation through dysregulated AKT activation

Omer Enes Onur1,2, Juan Andres Venegas3, Arda Durmaz3

  • 1Genomic Sciences and Systems Biology, Cleveland Clinic Research, Cleveland, OH, USA. onuro2@ccf.org.

NPJ Genomic Medicine
|April 28, 2026
PubMed

Insights

Germline PTEN mutations cause PTEN hamartoma tumor syndrome (PHTS). Specific mutations impact early development, influencing PHTS clinical outcomes and offering a platform for drug screening.

Area of Science:

  • Developmental Biology
  • Genetics
  • Cancer Research

Background:

  • PTEN hamartoma tumor syndrome (PHTS) arises from germline PTEN mutations, leading to diverse clinical features like hamartomas, cancers, and neurodevelopmental disorders.
  • The pleiotropic nature of PHTS presents significant patient management challenges.
  • The impact of specific PTEN mutations on early embryonic development remains incompletely understood.

Purpose of the Study:

  • To investigate the hypothesis that alterations during gastrulation, dependent on the specific mutant PTEN allele, contribute to the pleiotropism observed in PHTS.
  • To establish a model system for studying the effects of distinct PHTS-associated PTEN mutations on human embryonic development.

Main Methods:

  • Generation of gastruloids from isogenic human induced pluripotent stem cells carrying clinically relevant heterozygous PTEN mutations (PTENG132D/WT and PTENM134R/WT) and wild-type (PTENWT/WT).
  • Analysis of gastruloid morphology, gene expression patterns, and signaling pathway activation (e.g., AKT).
  • Application of a machine-learning algorithm for morphological classification and assessment of drug response.

Main Results:

  • PTENG132D/WT gastruloids exhibited axial over-elongation, linked to AKT hyperactivation and Snail (epithelial-to-mesenchymal transition regulator) upregulation.
  • Distinct gene expression enrichments in mesoderm and endoderm were observed in PTENG132D/WT gastruloids compared to PTENM134R/WT and PTENWT/WT gastruloids.
  • A machine-learning model successfully identified PTENG132D/WT gastruloids and predicted morphological reversal upon AKT inhibitor treatment.

Conclusions:

  • Mutant PTEN allele-specific alterations during early human development (gastrulation) may correlate with distinct clinical outcomes in PHTS patients.
  • This gastruloid model provides a valuable platform for dissecting pathogenic PTEN mutations and for screening potential therapeutic compounds.

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