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Improved hydrolysis of piperacillin by OXA-48-like R214G variants, a selective advantage under
Réva Nermont1, Saoussen Oueslati1,2, Magali Aumont-Nicaise3
1Faculty of Medicine, Team 'Resist', UMR1184 'Immunology of Viral, Auto-Immune, Hematological and Bacterial Diseases (IMVA-HB),' INSERM, Université Paris-Saclay, CEA, LabEx LERMIT, Le Kremlin-Bicêtre, France.
Abstract:
OXA-48-like carbapenemases have rapidly disseminated worldwide, becoming the most common carbapenemase in many countries, with more than 60 variants reported. Among them, OXA-244 (OXA-48-R214G) and OXA-484 (OXA-181-R214G) are increasingly reported, despite overall reduced hydrolytic activities for β-lactams, including temocillin and carbapenems. R214, located in the β5-β6 loop, through the interaction with D159, is crucial for carbapenem hydrolysis by structuring the active site. R214G variants of OXA-48-likes were analyzed by β-lactam susceptibility testing, steady-state kinetic analyses in the presence or absence of sodium hydrogen carbonate (NaHCO3), molecular modeling, X-ray crystallography, and protein stability assessments using differential scanning fluorimetry (DSF). The R214G substitution in OXA-48 and OXA-181 results in reduced minimal inhibitory concentrations (MICs) for all β-lactams, except for piperacillin and piperacillin/tazobactam combination, for which MICs are increased. OXA-244 and OXA-484 displayed a better affinity for piperacillin with lower Km than for parental enzymes and thus resulted in a higher catalytic efficiency for piperacillin hydrolysis. These results were supported by docking observations, highlighting enhanced affinity when glycine is located at position 214. Overall, DSF indicated that the R214G substitution, while destabilizing the active site, enhances the global stability of the protein, especially for OXA-244. The addition of NaHCO3 raised the activity and thermal stability of all enzymes, especially of OXA-48, which appeared more sensitive to the presence of NaHCO3. Although OXA-48-like R214G is considered a loss-of-function variant, our findings indicate it exhibits increased hydrolytic activity toward piperacillin, which may result in an advantage under piperacillin-tazobactam exposure and thus could contribute to the selection of these globally expanding variants.
Insights
OXA-48-like carbapenemase variants with R214G substitution show reduced activity against most beta-lactams but increased hydrolysis of piperacillin. This enhanced piperacillin activity may drive the selection of these globally expanding antimicrobial resistance genes.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- OXA-48-like carbapenemases are prevalent global threats, with over 60 variants identified.
- Emerging variants like OXA-244 and OXA-484 exhibit altered hydrolytic profiles despite reduced activity against key antibiotics.
- The R214 residue is critical for carbapenem hydrolysis by structuring the enzyme's active site.
Purpose of the Study:
- To investigate the biochemical and structural impact of the R214G substitution in OXA-48-like carbapenemases.
- To understand the altered substrate specificity and stability of OXA-244 and OXA-484 variants.
- To explore the role of sodium hydrogen carbonate in modulating enzyme activity and stability.
Main Methods:
- Susceptibility testing and steady-state kinetic analyses.
- Molecular modeling and X-ray crystallography.
- Differential scanning fluorimetry (DSF) for protein stability assessment.
Main Results:
- R214G substitution reduced minimal inhibitory concentrations (MICs) for most beta-lactams but increased MICs for piperacillin and piperacillin/tazobactam.
- OXA-244 and OXA-484 showed enhanced affinity and catalytic efficiency for piperacillin hydrolysis.
- The R214G substitution destabilized the active site but enhanced overall protein stability, with NaHCO3 increasing activity and thermal stability.
Conclusions:
- Despite being considered loss-of-function, R214G variants exhibit increased piperacillin hydrolysis, potentially conferring an advantage under piperacillin-tazobactam treatment.
- These findings highlight a mechanism for the selection and spread of OXA-48-like carbapenemase variants.
- Sodium hydrogen carbonate can enhance the activity and stability of OXA-48-like enzymes.
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