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Updated: May 4, 2026

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Using Synchrotron Radiation Microtomography to Investigate Multi-scale Three-dimensional Microelectronic Packages
Published on: April 13, 2016
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In vivo imaging of central nervous system fluid spaces using synchrotron radiation-based micro computed tomography
Marta Girona Alarcón1, Willy Kuo1, Mattia Humbel2
1University of Zurich, Department of Physiology, The Interface Group, Zurich, Switzerland.
Nature Communications
|May 2, 2026
Summary
A new imaging method, intravital synchrotron radiation-based hard X-ray micro computed tomography (SRµCT), allows dynamic, whole-brain visualization of mouse central nervous system (CNS) fluid dynamics with micrometer resolution.
Area of Science:
- Neuroscience
- Medical Imaging
- Biophysics
Background:
- Current intravital imaging techniques for the mouse central nervous system (CNS) lack the necessary resolution, coverage, and speed for comprehensive in vivo fluid dynamics studies.
- Existing methods create a gap between optical microscopy and MRI, hindering detailed analysis of organ-wide CNS processes.
Purpose of the Study:
- To introduce and validate intravital synchrotron radiation-based hard X-ray micro computed tomography (SRµCT) for dynamic, whole-brain imaging of mouse CNS fluid spaces.
- To overcome the limitations of current techniques by providing simultaneous micrometer spatial resolution, whole-brain coverage, and sub-minute temporal resolution.
Main Methods:
- Intravital SRµCT was performed on mouse CNS fluid spaces across three synchrotron radiation facilities.
- Imaging included both anesthetized free-breathing and mechanically ventilated animals, with and without cardiac gating.
- Achieved voxel sizes down to 6.3 µm and effective spatial resolution better than 20 µm, with temporal resolution up to 23 seconds.
Main Results:
- SRµCT enabled dynamic, whole-brain imaging of mouse CNS fluid spaces with micrometer-scale resolution.
- The technique allowed time-resolved visualization of cerebrospinal fluid (CSF) contrast distribution.
- Quantitative analysis of tissue motion across the entire brain was achieved in vivo.
Conclusions:
- SRµCT bridges the methodological gap between optical microscopy and MRI for CNS fluid dynamics research.
- This technique provides unprecedented spatiotemporal information for studying CSF dynamics and solute transport at the whole-brain scale.
- Establishes a framework for integrating mechanistic models with dynamic, high-resolution in vivo imaging data.

