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Causal Interpretation of DBSCAN Algorithm: A Dynamic Modeling for Epsilon Estimation.

K Garcia-Sanchez1, J-L Perez-Ramos1, S Ramirez-Rosales1

  • 1Facultad de Informática, Universidad Autónoma de Querétaro, Av. de las Ciencias S/N, Juriquilla, Santiago de Querétaro 76230, Mexico.

Entropy (Basel, Switzerland)
|May 4, 2026
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Summary
This summary is machine-generated.

This study introduces a novel dynamical system approach to optimize the neighborhood parameter epsilon for Density-Based Spatial Clustering of Applications with Noise (DBSCAN). The method improves clustering accuracy in complex datasets by modeling epsilon selection through ordinary differential equations.

Keywords:
DBSCANcausal inferenceinformation complexitystructural causal modelsystem dynamicsuncertainty reduction

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Area of Science:

  • Data Science
  • Machine Learning
  • Computational Statistics

Background:

  • Density-Based Spatial Clustering of Applications with Noise (DBSCAN) is a popular unsupervised learning algorithm.
  • Accurate selection of the neighborhood parameter epsilon is crucial for DBSCAN performance.
  • Traditional epsilon estimation methods struggle with high-dimensional and varying-density data.

Purpose of the Study:

  • To develop a robust method for selecting the DBSCAN neighborhood parameter epsilon.
  • To address limitations of traditional epsilon estimation in complex data scenarios.
  • To provide a principled framework for hyperparameter tuning in DBSCAN.

Main Methods:

  • A three-level perspective (algorithmic, modeling, causal) for DBSCAN hyperparameter selection.
  • Approximation of the ordered k-distance signal using a surrogate dynamical system inspired by mass-spring-damper models.
  • Modeling epsilon variation with ordinary differential equations and system identification via L-BFGS-B optimization.
  • Analysis of causal effects using Pearl's do-calculus and computation of Average Causal Effect (ACE).

Main Results:

  • The proposed method effectively models epsilon variation and identifies structurally informative transition regions.
  • Evaluations on synthetic and real-world datasets (Covtype) demonstrate improved epsilon selection.
  • Achieved ACE values of +0.9352, +0.5148, and +0.9246 indicate significant performance gains over geometric baselines.
  • Computational complexity is near O(N log N) under optimal conditions.

Conclusions:

  • The surrogate dynamical estimation framework offers a principled and effective approach to DBSCAN epsilon selection.
  • This method enhances clustering reliability in challenging high-dimensional and multi-density datasets.
  • The causal inference perspective provides a deeper understanding of the hyperparameter selection mechanism.