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  1. Home
  2. Ct-based Deep Foundation Model For Predicting Immune Checkpoint Inhibitor-induced Pneumonitis Risk In Lung Cancer.
  1. Home
  2. Ct-based Deep Foundation Model For Predicting Immune Checkpoint Inhibitor-induced Pneumonitis Risk In Lung Cancer.

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CT-Based Deep Foundation Model for Predicting Immune Checkpoint Inhibitor-Induced Pneumonitis Risk in Lung Cancer.

Amgad Muneer1, Eman Showkatian1, Yuliya Kitsel1,2

  • 1Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

Medrxiv : the Preprint Server for Health Sciences
|May 4, 2026

View abstract on PubMed

Summary
This summary is machine-generated.

A new AI model, CIPHER, predicts immune checkpoint inhibitor-induced pneumonitis (ICI-P) from baseline CT scans, outperforming traditional methods. This tool aids early risk identification for better patient management in lung cancer immunotherapy.

Keywords:
Immune-related adverse eventsNSCLCdeep learningfoundation modelpneumonitis

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Area of Science:

  • Artificial intelligence in medical imaging
  • Deep learning for predictive diagnostics
  • Oncology and immunotherapy research

Background:

  • Immune checkpoint inhibitors (ICIs) offer advanced cancer treatment but can cause severe immune-related adverse events (irAEs), notably pneumonitis (ICI-P).
  • Early identification of patients at high risk for ICI-P is crucial for proactive monitoring and timely intervention to optimize treatment outcomes.

Purpose of the Study:

  • To develop and validate a deep learning foundation model, CIPHER, for predicting ICI-P risk using baseline CT scans in lung cancer patients.
  • To assess the model's performance against established radiomic approaches.

Main Methods:

  • Designed CIPHER, a deep learning model using contrastive learning and a transformer-based masked autoencoder, pre-trained on a large dataset of non-small cell lung cancer (NSCLC) CT scans.
  • Fine-tuned and validated CIPHER on internal and external NSCLC cohorts, comparing its predictive accuracy against classical radiomic models.

Main Results:

  • CIPHER demonstrated strong performance in predicting ICI-P, with AUCs ranging from 0.77 to 0.85 in internal validation and 0.83 in external validation.
  • The model outperformed radiomic models in head-to-head comparisons, showing superior specificity without compromising sensitivity in external validation.

Conclusions:

  • CIPHER is the first AI foundation model for immune toxicity prediction, successfully developed and validated for forecasting ICI-P risk from pre-treatment CT scans.
  • Prospective validation and integration into clinical workflows could significantly improve patient management and outcomes in immunotherapy.