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Identification and Optimization of Kratom Strictosidine Pathway Enabled by Yeast Multiplex Engineering.
Yinan Wu1,2,3, Dong Oh Han1,3, Franklin Leyang Gong1
1Robert Frederick Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, USA.
Biorxiv : the Preprint Server for Biology
|May 4, 2026
Summary
Researchers reconstructed the kratom strictosidine pathway using multiplex engineering in yeast, identifying key genes and optimizing production. This work advances understanding of monoterpene indole alkaloid biosynthesis.
Area of Science:
- Plant biochemistry
- Metabolic engineering
- Natural product biosynthesis
Background:
- Monoterpene indole alkaloids (MIAs) are crucial plant natural products with pharmaceutical applications.
- The strictosidine biosynthetic pathway is fully known only in Catharanthus roseus.
- Kratom (Mitragyna speciosa) strictosidine biosynthesis was only partially understood.
Purpose of the Study:
- To elucidate and reconstruct the complete kratom strictosidine biosynthetic pathway.
- To utilize multiplex pathway engineering for rapid discovery and optimization.
- To enhance strictosidine production in a heterologous yeast system.
Main Methods:
- Multiplex pathway engineering in yeast for gene discovery and pathway assembly.
- Iterative integration and screening of functional kratom genes.
- Identification and characterization of a secologanin transporter (MsNPF2.6).
- Pathway optimization by incorporating enzymes from other plant species.
Main Results:
- Successfully reconstructed the complete kratom strictosidine pathway from geranyl pyrophosphate and tryptophan.
- Identified 13 functional kratom genes essential for the pathway.
- Discovered MsNPF2.6, a vacuolar transporter that increased strictosidine production by 62% in yeast.
- Achieved further production enhancement by incorporating nepetalactol-producing enzymes.
Conclusions:
- The strictosidine biosynthetic pathway in kratom has been fully established.
- Multiplex engineering is a powerful strategy for rapid plant pathway discovery and optimization.
- This study provides a foundation for engineering MIA production in heterologous hosts.

