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Updated: May 6, 2026

05:47
Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
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Autonomous Causal Discovery: Evaluating LLMs' Priors and Constraint Strategies for Reliability
Summary
This study introduces a framework to evaluate Large Language Model (LLM) constraints for Causal Structure Learning (CSL). It finds Path Forbidden (PFC) and Order Constraints (OC) offer a reliable balance for noisy LLM priors in CSL.
Area of Science:
- Artificial Intelligence
- Causal Inference
- Machine Learning
Background:
- Expert-guided Causal Structure Learning (CSL) enhances causal discovery accuracy using prior knowledge.
- Acquiring expert knowledge is challenging; Large Language Models (LLMs) offer an alternative, but their causal priors can be unreliable due to hallucinations.
- Existing methods lack systematic evaluation of LLM-derived constraints for CSL.
Purpose of the Study:
- To develop a framework for measuring the reliability and effectiveness of LLM-derived constraints in CSL.
- To systematically evaluate different types of structural constraints derived from LLMs.
- To propose an optimized CSL framework that effectively incorporates noisy LLM priors.
Main Methods:
- Introduced a structural constraint measurement framework defining constraint strength and quality.
- Evaluated five constraint categories: Edge Existence (EEC), Edge Forbidden (EFC), Path Existence (PEC), Path Forbidden (PFC), and Order Constraints (OC).
- Proposed a two-level CSL optimization framework partitioning the search space and refining structures with global path constraints.
Main Results:
- Edge Existence Constraints (EEC) show high strength but low quality from LLMs.
- Path Forbidden (PFC) and Order Constraints (OC) offer a balanced trade-off between search-space pruning and reliability.
- The proposed two-level CSL framework effectively incorporates noisy LLM priors, especially when expert knowledge is scarce.
Conclusions:
- LLM-derived constraints can be valuable for CSL, but their reliability must be carefully assessed.
- PFC and OC constraints provide a promising approach for leveraging LLM knowledge in CSL.
- The developed framework and optimization strategy enhance CSL performance in low-expert-knowledge settings.
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