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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
FTO rs7195994 Is associated with TNF inhibitor response in lean rheumatoid arthritis patients: A BMI-stratified
Yi-Ting Li1, I-Chieh Chen2,3, Hui-Wen Yang2
1Department of Post-Baccalaureate Medicine, College of Medicine, National Chung-Hsing University, Taichung, Taiwan.
Abstract:
Tumor necrosis factor inhibitors (TNFi) have transformed the management of rheumatoid arthritis (RA); however, up to 40% of patients fail to achieve an adequate clinical response. Current clinical predictors remain insufficient, highlighting the need for pharmacogenetic biomarkers to guide biologic therapy selection. In this study, we investigated genetic variants associated with TNFi treatment response, with a particular focus on body mass index (BMI)-dependent effects, using a large real-world cohort. A total of 519 patients with RA were identified from the Taiwan Precision Medicine Initiative (TPMI), an electronic health record-linked biobank. Eligible patients had received TNFi therapy for at least 6 months and had available genotyping data. Ninety-seven candidate single nucleotide polymorphisms (SNPs) previously reported to be associated with TNFi response were identified through a systematic literature search. Five variants located in immune-metabolic genes (FTO, ZNF618, RANK, CD84, and LOC105375523) were further analyzed using univariable and multivariable logistic regression models. Subgroup analyses stratified by BMI were performed to explore potential effect modification. Three variants-FTO rs7195994, ZNF618 rs16911006, and LOC105375523 rs834811-were significantly associated with TNFi response in initial analyses. In multivariable models, only FTO rs7195994 remained an independent predictor of non-response (odds ratio [OR] 0.44, 95% confidence interval [CI] 0.22-0.87; p = 0.019). Among patients with BMI < 27 kg/m², carriers of the rs7195994 risk allele had a 49% lower likelihood of achieving treatment response (OR 0.51, 95% CI 0.28-0.92; p = 0.0249), whereas no significant association was observed in patients with higher BMI. These findings identify FTO rs7195994 as a novel, BMI-modulated pharmacogenetic marker of TNFi non-response in RA. Incorporating BMI-stratified genetic profiling into clinical decision-making may facilitate early identification of patients unlikely to benefit from TNFi therapy, thereby supporting precision treatment strategies. Further validation in multiethnic populations and functional studies is warranted.
Insights
Tumor necrosis factor inhibitors (TNFi) are crucial for rheumatoid arthritis (RA) but often ineffective. The FTO rs7195994 genetic variant predicts TNFi non-response, especially in patients with lower BMI, aiding personalized RA treatment.
Area of Science:
- Pharmacogenetics
- Rheumatology
- Genetics
Background:
- Tumor necrosis factor inhibitors (TNFi) have revolutionized rheumatoid arthritis (RA) treatment.
- However, a significant portion of RA patients (up to 40%) do not respond adequately to TNFi therapy.
- Current clinical predictors for TNFi response are insufficient, necessitating the identification of pharmacogenetic biomarkers.
Purpose of the Study:
- To investigate genetic variants associated with TNFi treatment response in RA patients.
- To specifically examine the influence of body mass index (BMI) on the relationship between genetic variants and TNFi response.
- To identify novel pharmacogenetic markers for predicting TNFi non-response in RA.
Main Methods:
- A real-world cohort of 519 RA patients from the Taiwan Precision Medicine Initiative (TPMI) was analyzed.
- Genotyping data for 97 candidate single nucleotide polymorphisms (SNPs) previously linked to TNFi response were examined.
- Univariable and multivariable logistic regression models, including BMI-stratified subgroup analyses, were employed.
Main Results:
- Three variants (FTO rs7195994, ZNF618 rs16911006, LOC105375523 rs834811) showed initial associations with TNFi response.
- In multivariable analysis, only FTO rs7195994 remained a significant independent predictor of TNFi non-response (OR 0.44, p=0.019).
- Among patients with BMI < 27 kg/m², the rs7195994 risk allele carriers had a 49% lower likelihood of treatment response (OR 0.51, p=0.0249), with no significant association in higher BMI groups.
Conclusions:
- FTO rs7195994 is identified as a novel pharmacogenetic marker for TNFi non-response in RA.
- The effect of FTO rs7195994 on TNFi response is modulated by BMI.
- Integrating BMI-stratified genetic profiling may enhance precision medicine strategies for RA by identifying non-responders early.
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