Targeting NUDT21-mediated alternative polyadenylation of oncogenes ameliorates colorectal cancer malignancy and
Shih-Chieh Lin1,2,3, Ya-Chuan Tsai4, Jui-Lin Wang5
1Institute of Basic Medical Sciences, College of Medicine, National Cheng Kung University, Tainan, Taiwan, ROC. Jaylin@mail.ncku.edu.tw.
Background:
Colorectal cancer (CRC) is a disease leading cause of death worldwide. Lacking molecular markers for early detection and suitable candidates for targeted therapies are two main reasons for causing CRC malignancy.
Objectives:
Exploring the role of NUDT21 in colorectal cancer metastasis.
Methods:
A systematic bioinformatic analysis identified key genes involved in colorectal cancer, which were subsequently validated through loss-of-function and gain-of-function experiments conducted both in vitro and in vivo.
Results:
Overexpression of nucleoside diphosphate linked moiety X hydrolases-type motif 21 (NUDT21), a critical factor that regulates alternative polyadenylation, is observed in malignant polyps and in human and mouse CRC. Survival analysis reveals that high level of NUDT21 is associated with poor prognosis. NUDT21 knockdown not only inhibits cell growth but also reduces malignancy traits like anchorage-independent growth and cancer stemness. RNA-seq and RIP-seq results show NUDT21 preferentially binds to the proximal alternative polyadenylation site of numerous oncogenes to promote their expression and thus drive the progression of CRC. Treatment with re-purposing drugs targeting NUDT21 exhibit therapeutic potential in cell culture, organoid, orthotopic, and patient-derived xenografted CRC models.
Conclusions:
These findings demonstrate that NUDT21 is a critical regulator of colon cancer progression and a promising therapeutic target for CRC.
Insights
Nucleoside diphosphate linked moiety X hydrolases-type motif 21 (NUDT21) drives colorectal cancer progression by promoting oncogene expression. Targeting NUDT21 shows therapeutic potential for treating this deadly disease.
Area of Science:
- Oncology
- Molecular Biology
- Bioinformatics
Background:
- Colorectal cancer (CRC) is a major global health concern.
- Lack of early detection markers and targeted therapies contributes to CRC malignancy.
Purpose of the Study:
- To investigate the role of NUDT21 in colorectal cancer metastasis.
- To explore NUDT21 as a potential therapeutic target for CRC.
Main Methods:
- Systematic bioinformatic analysis to identify key genes in CRC.
- In vitro and in vivo loss-of-function and gain-of-function experiments.
- RNA-sequencing and RIP-sequencing to elucidate NUDT21 mechanisms.
- Evaluation of repurposed drugs targeting NUDT21 in preclinical models.
Main Results:
- NUDT21 is overexpressed in malignant polyps and CRC tissues (human and mouse).
- High NUDT21 levels correlate with poor patient prognosis.
- NUDT21 knockdown inhibits CRC cell growth, anchorage-independent growth, and cancer stemness.
- NUDT21 binds to alternative polyadenylation sites of oncogenes, enhancing their expression and promoting CRC progression.
- Repurposed drugs targeting NUDT21 demonstrate therapeutic efficacy in various CRC models.
Conclusions:
- NUDT21 is a key regulator of colon cancer progression.
- NUDT21 represents a promising therapeutic target for colorectal cancer treatment.
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