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A High-throughput Automated Platform for the Development of Manufacturing Cell Lines for Protein Therapeutics
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A Modular and Scalable FPGA Platform for Intelligent, High-Throughput Image-Activated Cell Sorting.

Yan Ding1, Jiehua Zhou1,2, Ruiqi Xi1

  • 1School of Integrated Circuits, Wuhan University, Wuhan, China.

Cytometry. Part a : the Journal of the International Society for Analytical Cytology
|May 6, 2026
PubMed
Summary
This summary is machine-generated.

This study presents a stable, low-latency image processing solution for image-activated cell sorting (IACS) using field-programmable gate arrays (FPGAs). The system achieves rapid AI inference for enhanced cell classification and sorting accuracy.

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Area of Science:

  • Biotechnology
  • Artificial Intelligence
  • Microfluidics

Background:

  • Image-activated cell sorting (IACS) links cell morphology to physiology for high-throughput classification.
  • Integrating artificial intelligence (AI) enhances morphological analysis but increases computational complexity, leading to latency issues in IACS.
  • High latency and instability in AI-driven IACS analysis can result in longer processing times and inaccurate cell sorting.

Purpose of the Study:

  • To develop a stable, low-latency image processing system for IACS using field-programmable gate arrays (FPGAs).
  • To enhance real-time AI inference for cellular data acquisition and classification within IACS.
  • To overcome the computational challenges and latency problems associated with AI in IACS.

Main Methods:

  • Developed a two-stage FPGA processing system leveraging the high-level synthesis (HLS) framework for cellular data acquisition and AI inference.
  • Deployed a customized U-Net model on an AMD-Xilinx accelerator card, incorporating hardware acceleration for activation functions and convolutions.
  • Implemented hardware acceleration modules, including activation function approximation and pixel-level convolution acceleration, for optimized performance.

Main Results:

  • Achieved a stable image segmentation latency of 3.06 milliseconds (ms) at a 272 MHz clock frequency.
  • Delivered a high processing throughput of up to 16,601 frames per second (fps).
  • Successfully separated deformed HeLa cells and distinguished various cell types (colorectal cells, red blood cells, HeLa cells) and microspheres based on morphological parameters.

Conclusions:

  • The developed FPGA-based system provides a stable and low-latency image processing solution for IACS.
  • This approach significantly improves the efficiency and accuracy of AI-driven cell sorting.
  • The system demonstrates the potential for real-time, high-throughput cell analysis in biological and medical applications.