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Large-Scale Multi-Omics Genome-Wide Association Studies (Mo-GWAS): Guidelines for Sample Preparation and Normalization
Published on: July 27, 2021
Cross-population validation of European GWAS loci for metabolic syndrome in Chinese schizophrenia
Yangyang You1,2, Ning Qiao1, Yao Chen1
1Department of Psychiatry, The Affiliated Brain Hospital of Nanjing Medical University, Nanjing, 210029, PR China.
Background:
Long-term use of second-generation antipsychotics (SGAs) increases the risk of metabolic syndrome (MS) in patients with schizophrenia (SCZ). Using susceptibility loci identified by European Genome-Wide Association Study (GWAS) as entry points, we conducted a case-control study to verify their association with antipsychotic-induced MS in Chinese Han SCZ patients.
Methods:
Clinical and metabolic data were collected from 528 chronically SCZ patients who had been treated with SGAs for ≥ 12 months. Patients were divided into MS (n = 232) and non-MS (n = 296) groups. Forty tag single-nucleotide polymorphisms (SNPs) selected from European GWAS data were genotyped; inter-group comparisons and risk analyses for MS-related factors were performed.
Results:
Compared with the non-MS group, the MS group exhibited significantly elevated waist circumference, systolic blood pressure (SBP), diastolic blood pressure (DBP), triglycerides (TG), fasting plasma glucose (FPG), and body-mass index (BMI), alongside significantly reduced age and high-density lipoprotein cholesterol (HDL-C) levels (all P < 0.05). Allele-based analysis revealed that the G allele of G-protein-coupled receptor 98 (GPR98) rs1967256 was more prevalent in MS patients (χ² = 4.049, P = 0.046), whereas the T allele of Tudor domain-containing protein 15 / Long intergenic non-protein coding RNA 1822 (TDRD15/LINC01822) rs1117324 showed reduced frequency (χ² = 6.639, P = 0.011). Genotype analysis further indicated an over-representation of the rs1117324 T/T genotype in the MS group (χ² = 10.833, P = 0.004). Multivariate logistic regression demonstrated that older age at onset, lower BMI and rs1117324 C/T genotype (compared to T/T) were protective factors, while rs1117324 C/C genotype was risk factor for hyperglycaemia. In addition, male sex, higher BMI and rs1967256 C/C genotype (compared to GG) were identified as risk factors for low HDL-C.
Conclusions:
Among the 40 MS susceptibility loci previously identified by European GWAS, we validated two loci-GPR98 rs1967256 and TDRD15/LINC01822 rs1117324-as being significantly associated with antipsychotic-induced MS in Chinese Han patients with SCZ.
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