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Updated: May 8, 2026

Detection of Homologous Recombination Intermediates via Proximity Ligation and Quantitative PCR in Saccharomyces cerevisiae
Published on: September 11, 2022
Residual double strand break repair during meiosis in budding yeast is promoted by PIF1, RAD54 and RDH54/TID1
Raunak Dutta1, Lihong Wan1, David Murtha1
1Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794-5215,United States.
Abstract:
In the budding yeast, Saccharomyces cerevisiae, repair of programmed double strand breaks occurs in 2 phases during prophase I of meiosis. During Phase 1 interhomolog recombination is mediated by the meiosis-specific Dmc1 recombinase. Crossover-specific recombination intermediates enable synapsis of homologous chromosomes, resulting in a transition to Rad51-mediated recombination in Phase 2 that repairs any residual double strand breaks so that chromosomes are intact when cells progress into the first meiotic division. Studying Phase 2 recombination is challenging because the number of breaks present at pachynema (the prophase I stage when all the homologs are synapsed) is small and a low frequency of new breaks continues to be made. Using a newly developed method for analyzing Phase 2 recombination, this work discovered that RDH54/TID1 can partially compensate for RAD54, while PIF1 functions independently from both RAD54 and RDH54/TID1 in this process.
Insights
Researchers studied double-strand break repair in yeast meiosis. They found RDH54/TID1 partially compensates for RAD54, while PIF1 acts independently in this crucial DNA repair process.
Area of Science:
- Cell Biology
- Genetics
- Molecular Biology
Background:
- Meiosis involves programmed double-strand breaks (DSBs) for homologous recombination.
- DSB repair in Saccharomyces cerevisiae occurs in two phases during prophase I.
- Phase 1 is Dmc1-mediated, facilitating synapsis, followed by Phase 2 Rad51-mediated repair.
Purpose of the Study:
- To investigate the roles of RAD54, RDH54/TID1, and PIF1 in Phase 2 meiotic recombination.
- To overcome challenges in studying the low frequency of DSBs during pachynema.
Main Methods:
- Development of a novel method for analyzing Phase 2 recombination.
- Utilizing budding yeast (Saccharomyces cerevisiae) as a model organism.
Main Results:
- RDH54/TID1 was found to partially compensate for RAD54 function in Phase 2 repair.
- PIF1 demonstrated independent function, not relying on RAD54 or RDH54/TID1 for its role.
- The study provides new insights into the complex genetic regulation of meiotic recombination.
Conclusions:
- RAD54, RDH54/TID1, and PIF1 play distinct roles in the repair of residual DSBs during meiotic prophase I.
- Understanding these repair pathways is critical for ensuring genomic stability during meiosis.
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