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A Rapid Strategy for the Isolation of New Faustoviruses from Environmental Samples Using Vermamoeba vermiformis
Published on: June 4, 2016
Genome sequence of Fraser's dolphin morbillivirus isolated from a stranded Fraser's dolphin (Lagenodelphis hosei) in
Nelmarie Landrau-Giovannetti1, Thomas B Waltzek2, John A Lednicky3,4
1Health and Stranding Lab, College of Tropical Agriculture and Human Resilience, University of Hawai'i at Mānoa, Honolulu, Hawai'i, 96822, USA.
Abstract:
Over the past three decades, cetacean morbilliviruses (CeMVs) have emerged as significant pathogens affecting cetacean populations worldwide. Here, we report the genome sequence of a new CeMV, designated Fraser's dolphin morbillivirus (FDMV), isolated from a stranded Fraser's dolphin (Lagenodelphis hosei) in Hawai'i in 2018. Next-generation sequencing facilitated recovery of the nearly complete FDMV genome (15,685 bp), and annotation indicated a genomic organization similar to that of other morbilliviruses, including six open reading frames. Genetic analysis of the FDMV RNA-dependent RNA polymerase gene sequence showed 87-89.6% nucleotide sequence identity compared with other CeMV strains. Phylogenetic analysis demonstrated that FDMV is a distinct member of the genus Morbillivirus, branching as the most basal member of the CeMV clade, which may represent a new species.
Insights
A new cetacean morbillivirus (CeMV), Fraser
Area of Science:
- Veterinary Virology
- Marine Mammal Health
- Genomics
Background:
- Cetacean morbilliviruses (CeMVs) are significant pathogens impacting marine mammal populations globally.
- Emergence of novel CeMV strains poses a continuous threat to cetacean health and conservation efforts.
Purpose of the Study:
- To sequence and characterize the genome of a novel morbillivirus identified in a Fraser's dolphin.
- To determine the phylogenetic relationship of this new virus to other known morbilliviruses.
Main Methods:
- Next-generation sequencing was employed to obtain the nearly complete genome of the novel CeMV.
- Bioinformatic analysis was used to annotate the genome and compare gene sequences with existing morbillivirus strains.
Main Results:
- The genome sequence of Fraser's dolphin morbillivirus (FDMV) was successfully recovered (15,685 bp).
- FDMV exhibits a genomic organization typical of morbilliviruses, with six open reading frames.
- Genetic analysis revealed 87-89.6% nucleotide sequence identity in the RNA-dependent RNA polymerase gene compared to other CeMVs.
- Phylogenetic analysis places FDMV as a distinct and basal member of the CeMV clade, potentially representing a new species.
Conclusions:
- This study reports the first genome sequence of Fraser's dolphin morbillivirus (FDMV).
- FDMV represents a distinct lineage within cetacean morbilliviruses, highlighting viral diversity and potential speciation.
- Findings underscore the importance of ongoing surveillance for novel morbilliviruses in marine mammals.
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