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Updated: May 9, 2026

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Deep-Tissue Three-Photon Fluorescence Microscopy in Intact Mouse and Zebrafish Brain
Published on: January 13, 2022
Simultaneous three-photon and optical coherence microscopy deep within an intact mouse brain
Xusan Yang1,2, Siyang Liu3, Fei Xia4,5,6
1School of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA. xusanyang@iphy.ac.cn.
Npj Imaging
|May 7, 2026
Summary
This study combines three-photon microscopy (3PM) and spectral-domain optical coherence microscopy (SD-OCM) for deep tissue imaging. The multimodal approach allows simultaneous visualization of structures in the mouse brain in vivo.
Area of Science:
- Biomedical Engineering
- Neuroscience
- Optical Imaging
Background:
- Multimodal microscopy offers complementary tissue information in a single session.
- Combining imaging techniques enhances visualization capabilities for complex biological samples.
Purpose of the Study:
- To demonstrate a multimodal imaging approach combining three-photon microscopy (3PM) and spectral-domain optical coherence microscopy (SD-OCM).
- To showcase the simultaneous use of an optical parametric amplifier (OPA) laser source for 3PM, third harmonic generation (THG), and SD-OCM.
- To evaluate the system's performance for deep tissue imaging in vivo.
Main Methods:
- Utilized a multimodal microscopy system integrating 3PM and SD-OCM.
- Employed an optical parametric amplifier (OPA) laser source at a 1620 nm center wavelength.
- Performed in vivo imaging of deep mouse brains.
Main Results:
- Achieved simultaneous 3PM, THG, and SD-OCM imaging using a single OPA laser source.
- Visualized fine structures like myelinated axons, neurons, and fiber tracts at depths exceeding 1 mm in adult mouse brains.
- Demonstrated noninvasive imaging with high spatial resolution using combined linear and nonlinear contrast mechanisms.
Conclusions:
- Simultaneous OCM and 3PM at long wavelengths provide a powerful tool for deep tissue imaging in vivo.
- The demonstrated multimodal system offers a convenient and effective approach for neuroscience research.
- This technique advances noninvasive visualization of neural structures in the intact brain.

