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Microplastic and lead shift microbiomes enriching viral auxiliary metabolic genes for potential polylactic acid
Xieluyao Wei1, Kinza Bashir1, Xianrui Tian1
1College of Resources, Sichuan Agricultural University, Chengdu, China.
Abstract:
Biodegradable microplastics and heavy metals increasingly co-occur in soils through plastic mulching, organic amendments, and legacy metal contamination. Yet, their combined effects on soil-plant-microbiota interactions remain unclear, particularly for the virus. Here we evaluated the impacts of bio-MPs, polylactic acid (PLA), lead (Pb), and their combination on buckwheat and rhizosphere bacterial-viral communities. Co-contamination reduced soil pH and nutrient availability, increased Pb accumulation in plant tissues and suppressed buckwheat growth. Metagenomic analyses revealed that both bacterial and viral communities were altered under Pb-containing treatments. Bacterial genes associated with carbon and phosphorus metabolism were suppressed, while viral auxiliary metabolic genes (AMGs) related to carbon utilization were enriched, especially carbohydrate esterases that hydrolyze PLA ester bonds. A putative AMG-associated carbohydrate esterase gene (P9222_28545) was identified and the esterase activity confirmed via heterologous expression in E. coli. These findings highlight a potential role of viruses in mediating microplastic degradation in soils.
Insights
Biodegradable microplastics and lead co-contamination harm soil health and plant growth. Viruses may play a role in breaking down microplastics in contaminated soils.
Area of Science:
- Environmental Science
- Soil Science
- Microbiology
Background:
- Biodegradable microplastics (bio-MPs) and heavy metals like lead (Pb) are common soil contaminants.
- Their combined impact on soil ecosystems, especially viral communities, is poorly understood.
Purpose of the Study:
- To investigate the effects of polylactic acid (PLA) microplastics, lead, and their combination on buckwheat plants and associated microbial communities.
- To explore the role of viruses in the co-contamination scenario.
Main Methods:
- Field study involving buckwheat cultivation under different treatments: PLA, Pb, and combined PLA+Pb.
- Metagenomic sequencing of soil bacterial and viral communities.
- Analysis of plant growth, tissue metal accumulation, soil properties, and gene expression.
Main Results:
- Co-contamination reduced soil pH, nutrient availability, and buckwheat growth, while increasing Pb uptake.
- Lead-altered bacterial communities, suppressing carbon and phosphorus metabolism genes.
- Viral communities showed enriched auxiliary metabolic genes (AMGs) for carbon utilization, particularly those hydrolyzing PLA ester bonds.
Conclusions:
- Combined microplastic and heavy metal contamination poses significant risks to soil health and plant productivity.
- Viruses may contribute to the degradation of biodegradable microplastics in soil ecosystems.
- Identification of a specific viral esterase suggests a mechanism for PLA breakdown.
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