Related Experiment Video
Updated: May 9, 2026

High-Resolution Three-Dimensional Whole-Organ Tomography of Microbial Infections
Published on: March 1, 2024
Multimodal holotomography for volumetric monitoring of host-pathogen interactions
Ziyang Yu1,2, Lei Jin1,2, Mingyang Liang2,3
1Institute of Biomedical Engineering, University of Toronto, 164 College Street, Toronto, ON, M5S 3G9, Canada.
Background:
A strategic way to gain a deeper understanding of how infection occurs is to characterize the mechanisms of pathogen binding and uptake. To accomplish this, we have focused our efforts on developing approaches that enable real-time monitoring of the initial stages of pathogen binding and the dynamics of the corresponding cellular response, including how membrane receptors are recruited to the binding sites. Past efforts have relied largely on widefield fluorescence imaging to track receptor recruitment and pathogen uptake.
Methods:
In this work, we have applied holotomography (HT) to probe pathogen binding using 3D refractive index (RI) reconstruction and spatial-temporal bacteria tracking. While promising, we also report on the challenges encountered in developing a multimodal correlative HT-fluorescence approach for real-time visualization of pathogen uptake and engagement.
Results:
We report here on an imaging platform that integrates HT with multicolor fluorescence microscopy. The system can reconstruct quantitative RI volumes and perform single particle and pathogen tracking. We applied this system to monitor the interaction of Neisseria gonorrhoeae bacteria with live CEACAM-expressing HeLa cells, coupling HT with simultaneous two-channel highly inclined laminated optical sheet (HILO) fluorescence imaging to track the dynamics and spatial distribution of membrane receptors and bacteria within the same field of view. Simultaneous acquisition and co-registration of the phase and fluorescence channels resulted in a multicolor, temporally synchronized dataset of pathogen binding and receptor engagement, portending video-rate three-dimensional tracking of pathogen binding and uptake.
Conclusions:
The coupled platform we have developed has enabled direct volumetric imaging of the dynamics of pathogen binding and concomitant recruitment of membrane receptors on live cells. The platform closes a critical gap between optically sectioned fluorescence and label-free 3D phase imaging and can be adapted to other receptor-ligand systems that would benefit from correlated structural and functional insights.
Related Concept Videos
Three-Dimensional Microscopy in Microbiology
Two-Dimensional Microscopy in Microbiology
Imaging Studies III: Gastrointestinal Motility Studies and Virtual Colonoscopy
Radionuclide Testing
Radionuclide testing is a sophisticated medical technique for assessing gastrointestinal motility. It focuses on gastric emptying and colonic transit time. Radioactive markers track the movement of food through the digestive system, providing insights into gastrointestinal disorders.
In gastric emptying studies, a meal's liquid and solid...
Positron Emission Tomography
One of the main requirements of a PET scan is a positron-emitting radioisotope, which is produced in a cyclotron and then attached to a substance used by the part of the body being...
Imaging Studies III: Computed Tomography
Computed Tomography
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...

