Mass spectrometry-based single-cell proteomics technologies, trends, and biological insights

Single-cell proteomics (SCP) has emerged as a transformative approach for characterizing cellular heterogeneity at the protein level. Recent advances in mass spectrometry workflows, with improvements spanning sample preparation, peptide separation, data acquisition, and data interpretation, have enabled unprecedented proteome depth and throughput at single-cell resolution. Beyond technological innovations, SCP is now addressing complex biological questions in oncology, developmental biology, and neuroscience, revealing dynamic cellular states and regulatory mechanisms. Integration with other single-cell omics is bridging the gap between genotype-phenotype relationships and uncovering multilayered regulation. In this review, we summarize recent progress in SCP technologies and highlight emerging applications and integrative strategies that mark a transition from technological development to broad biological understanding.