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A Comprehensive Protocol for Manual Segmentation of the Medial Temporal Lobe Structures
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NeuroLangSeg: Language-Guided Subcortical Segmentation with Pseudo-Supervision and Anatomical-Linguistic Validation.

Ruiying Liu1, Jialu Liu1, Xuzhe Zhang2

  • 1Department of Biomedical Informatics, Emory University.

Proceedings of Machine Learning Research
|May 11, 2026
PubMed
Summary

NeuroLangSeg introduces a language-guided framework for consistent brain MRI subcortical segmentation. This approach ensures anatomical accuracy and enables reliable cross-model comparisons for research and clinical applications.

Keywords:
Anatomical ProtocolAnatomical–Linguistic EvaluationBrain MRILanguage-Driven Segmentation

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Area of Science:

  • Neuroimaging
  • Artificial Intelligence
  • Computational Anatomy

Background:

  • Vision-language models and LLMs advance contextual anatomical reasoning in brain MRI segmentation.
  • A key limitation is the lack of unified anatomical definitions and consistent annotation standards in existing datasets.
  • This heterogeneity hinders cross-model comparison and valid anatomical measurements.

Purpose of the Study:

  • To introduce NeuroLangSeg, a language-guided framework enforcing a consistent anatomical protocol for subcortical segmentation.
  • To address the limitations of heterogeneous labeling systems and enable anatomically consistent segmentations.
  • To support subject-level reporting grounded in a unified anatomical standard.

Main Methods:

  • NeuroLangSeg integrates a pretrained image encoder with protocol-aligned anatomical prompts and a masked pseudo-labeling strategy.
  • An anatomical-linguistic evaluator acts as a training discriminator, assessing shape, spatial relationships, and volumetric norms.
  • The framework enables data-efficient and interpretable learning under limited supervision.

Main Results:

  • NeuroLangSeg achieves improved segmentation accuracy, with +4.1 DSC / +8.0 NSD in in-site settings and +3.6 DSC / +14.5 NSD in cross-site generalization.
  • The LLM-visual integration enables anatomically verifiable predictions.
  • The framework yields consistent segmentations suitable for research and clinical use.

Conclusions:

  • NeuroLangSeg provides a unified anatomical standard for subcortical segmentation in brain MRI.
  • The language-guided framework enhances segmentation consistency and accuracy.
  • This approach facilitates reliable anatomical measurements and reporting across diverse datasets.