Related Experiment Video
Updated: May 13, 2026

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens
Published on: June 28, 2018
THOI: An efficient and accessible library for computing higher-order interactions enhanced by batch-processing
Laouen Belloli1,2,3, Pedro A M Mediano4,5, Rodrigo Cofré6
1Laboratorio de Inteligencia Artificial Aplicada, Instituto de Ciencias de la Computación, Universidad de Buenos Aires, Buenos Aires, Argentina.
None:
Complex systems are characterized by nonlinear dynamics, multi-level interactions, and emergent collective behaviors. Traditional analyses that focus solely on pairwise interactions often oversimplify these systems, neglecting the higher-order interactions critical for understanding their full collective dynamics. Recent advances in multivariate information theory provide a principled framework for quantifying these higher-order interactions, capturing key properties such as redundancy, synergy, shared randomness, and collective constraints. However, two major challenges persist: accurately estimating joint entropies and addressing the combinatorial explosion of interacting terms. To overcome these challenges, we introduce THOI (Torch-based High-Order Interactions), a novel, accessible, and efficient Python library for computing high-order interactions in continuous-valued systems. THOI leverages the well-established Gaussian copula method for joint entropy estimation, combined with state-of-the-art batch and parallel processing techniques to optimize performance across CPU, GPU, and TPU environments. Our results demonstrate that THOI significantly outperforms existing tools in terms of speed and scalability. Specifically, THOI reduces the time required to exhaustively analyze all interactions in small systems (≤ 30 variables). For larger systems, where exhaustive analysis is computationally impractical, THOI integrates optimization strategies that make higher-order interaction analysis feasible. We validate THOI's accuracy using synthetic datasets with parametrically controlled interactions and further illustrate its utility by analyzing fMRI data from human subjects in wakeful resting states and under deep anesthesia. Finally, we analyzed over 900 real-world and synthetic datasets, establishing a comprehensive framework for applying higher-order interaction (HOI) analysis in complex systems. THOI opens new perspectives for testing both established and novel hypotheses about the multi-level, nonlinear, and multidimensional nature of complex systems.
Related Concept Videos
Protein-protein Interfaces
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
The Small x Assumption

