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Rapid Diagnosis of Avian Influenza Virus in Wild Birds: Use of a Portable rRT-PCR and Freeze-dried Reagents in the Field
Published on: August 2, 2011
North American perspective on the highly pathogenic avian influenza H5Nx clade 2.3.4.4b outbreak (November 2021-March
Jolene A Giacinti1, Anthony Signore2, Mia Torchetti3
1Environment and Climate Change Canada, Ecotoxicology and Wildlife Health Division, Burlington, ON, Canada.
Abstract:
Influenza A (H5Nx) highly pathogenic avian influenza viruses of clade 2.3.4.4b were first detected in North America in late 2021, initiating a multi-year outbreak unprecedented in geographic extent, duration, and host range. Surveillance conducted across Canada, the United States, and Mexico has documented widespread detections in wild birds and poultry, and repeated spillover into wild and domestic mammals. Genomic analyses reveal successive lineage replacements and extensive reassortment between Eurasian and North American lineages, with over 100 distinct genotypes identified to date. Recent events, including detection of genotype B3.13 in United States dairy cattle and the emergence of genotype D1.1 across all four North American migratory bird flyways, highlight ongoing viral evolution and cross-species transmission risks. This synthesis provides a continental overview of the outbreak from 1 November 2021 to 31 March 2025, summarizing surveillance results and genomic trends to inform continued One Health preparedness and response efforts.
Insights
Highly pathogenic avian influenza (H5Nx) viruses have caused a widespread North American outbreak since 2021, impacting birds, poultry, and mammals. Ongoing evolution and reassortment pose significant cross-species transmission risks.
Area of Science:
- Veterinary Virology
- Epidemiology
- Genomics
Background:
- Highly pathogenic avian influenza (H5Nx) viruses, specifically clade 2.3.4.4b, emerged in North America in late 2021.
- This outbreak is unprecedented in its geographic spread, duration, and the range of affected hosts, including wild birds, poultry, and mammals.
Purpose of the Study:
- To provide a continental overview of the H5Nx avian influenza outbreak in North America from November 2021 to March 2025.
- To summarize surveillance findings and genomic trends.
- To inform One Health preparedness and response strategies.
Main Methods:
- Continental surveillance data collection across Canada, the United States, and Mexico.
- Genomic analysis to identify viral lineages, reassortment events, and genotypes.
- Tracking of spillover events into wild and domestic mammals.
Main Results:
- Widespread detections of H5Nx avian influenza in wild birds and poultry across North America.
- Documented spillover events into various wild and domestic mammal species.
- Identification of over 100 distinct genotypes, including recent emergence of B3.13 in cattle and D1.1 in migratory birds.
Conclusions:
- The H5Nx avian influenza outbreak demonstrates ongoing viral evolution and significant cross-species transmission risks.
- Continued surveillance and genomic monitoring are crucial for One Health preparedness.
- The findings underscore the need for robust response efforts to mitigate future outbreaks.
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