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High-Throughput Cellular Profiling of Targeted Protein Degradation Compounds Using HiBiT CRISPR Cell Lines
Published on: November 9, 2020
Proteasome inhibition enhances lysosome-mediated targeted protein degradation
Ahmed M Elshazly1,2,3, Nayyerehalsadat Hosseini1, Janakiram Vangala1
1Department of Pathology, Virginia Commonwealth University, Richmond, VA, USA.
Abstract:
Proteasome inhibitor drugs are currently used in the clinic to treat multiple myeloma and mantle cell lymphoma. These inhibitors cause accumulation of undegraded proteins, thus inducing proteotoxic stress and consequent cell death. However, cancer cells counteract this effect by activating an adaptive response through the transcription factor nuclear factor erythroid 2-related factor 1 (NRF1, also known as NFE2L1). NRF1 induces transcriptional upregulation of proteasome and autophagy/lysosomal genes, thereby reducing proteotoxic stress and diminishing the effectiveness of proteasome inhibition. While suppressing this protective autophagy response is one potential strategy, here we investigated whether this heightened autophagy could instead be leveraged therapeutically. To this end, we designed an autophagy-targeting chimera (AUTAC) compound to selectively degrade the anti-apoptotic protein Mcl1 via the lysosome. Our results show that this lysosome-mediated targeted degradation is significantly amplified in the presence of proteasome inhibition, in a NRF1-dependent manner. Mechanistically, AUTAC-driven Mcl1 clearance requires K63-linked ubiquitination by UBC13 and TRAF6 and recognition by the cargo receptor p62/SQSTM1. The combination of the proteasome inhibitor carfilzomib and Mcl1 AUTAC synergistically promoted cell death in both in vitro models, including wild-type and proteasome inhibitor-resistant multiple myeloma and lung cancer cells, and in mouse tumor xenografts. Thus, our work offers a novel strategy for enhancing proteasome inhibitor efficacy by exploiting the adaptive autophagy response. More broadly, our study establishes a framework for amplifying lysosome-mediated targeted protein degradation, with potential applications in cancer therapeutics and beyond.
Insights
Cancer cells activate adaptive autophagy in response to proteasome inhibitors. This study developed an autophagy-targeting chimera (AUTAC) to degrade Mcl1, enhancing proteasome inhibitor efficacy and promoting cancer cell death.
Area of Science:
- Oncology
- Molecular Biology
- Cellular Biology
Background:
- Proteasome inhibitors are used for multiple myeloma and mantle cell lymphoma, but cancer cells develop resistance.
- Cancer cells activate nuclear factor erythroid 2-related factor 1 (NRF1) to upregulate proteasome and autophagy genes, counteracting proteasome inhibition.
- This adaptive response reduces proteotoxic stress, diminishing proteasome inhibitor effectiveness.
Purpose of the Study:
- To investigate leveraging the adaptive autophagy response therapeutically instead of suppressing it.
- To design an autophagy-targeting chimera (AUTAC) for selective degradation of the anti-apoptotic protein Mcl1 via the lysosome.
- To determine if combining proteasome inhibitors with Mcl1 AUTAC enhances cancer cell death.
Main Methods:
- Designed an autophagy-targeting chimera (AUTAC) to induce lysosomal degradation of Mcl1.
- Investigated the mechanism of AUTAC-mediated degradation, including ubiquitination and cargo receptor involvement.
- Tested the combination of a proteasome inhibitor (carfilzomib) and Mcl1 AUTAC in vitro and in vivo models.
Main Results:
- Lysosome-mediated Mcl1 degradation by AUTAC was amplified in the presence of proteasome inhibition, dependent on NRF1.
- AUTAC-driven Mcl1 clearance required K63-linked ubiquitination by UBC13 and TRAF6, and p62/SQSTM1 recognition.
- The combination of carfilzomib and Mcl1 AUTAC synergistically induced cell death in multiple myeloma and lung cancer cells, including resistant lines, and reduced tumor xenografts.
Conclusions:
- This study presents a novel strategy to enhance proteasome inhibitor efficacy by exploiting the adaptive autophagy response.
- The developed AUTAC compound effectively targets Mcl1 for lysosomal degradation, amplifying therapeutic effects when combined with proteasome inhibitors.
- This work establishes a framework for amplifying lysosome-mediated targeted protein degradation for cancer therapeutics.
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