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Related Concept Videos

¹H NMR: Interpreting Distorted and Overlapping Signals01:02

¹H NMR: Interpreting Distorted and Overlapping Signals

Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)01:19

2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)

Heteronuclear single-quantum correlation spectroscopy (HSQC) is a 2D NMR technique that reveals one-bond correlations between hydrogen and a heteronucleus. The HSQC experiment is similar to the heteronuclear correlation experiment (HETCOR) but is more sensitive. In the HSQC spectrum, the proton chemical shift is plotted on the horizontal F2 axis, while the 13C chemical shift is plotted on the vertical F1 axis. The corresponding proton and 13C spectra are also shown. The HSQC contour plot does...
¹H NMR Signal Integration: Overview00:58

¹H NMR Signal Integration: Overview

The intensity of a signal, which can be represented by the area under the peak, depends on the number of protons contributing to that signal. The area under each peak is shown as a vertical line called an integral, with the integral value listed under it, as seen in the proton NMR spectrum of benzyl acetate. Each integral value is divided by the smallest integral value to obtain the ratio of the number of protons producing each signal. The ratio reveals the relative number of protons and not...
2D NMR: Overview of Heteronuclear Correlation Techniques01:18

2D NMR: Overview of Heteronuclear Correlation Techniques

Heteronuclear correlation spectroscopy is an analytical technique that investigates the coupling between different types of nuclei, often a proton and an X-nucleus, such as carbon-13 or nitrogen-15. This method is commonly used in nuclear magnetic resonance (NMR) spectroscopy to gain insights into complex chemical compounds' structural and compositional aspects. A typical heteronuclear correlation spectrum displays X-nucleus chemical shifts on one axis and a proton spectrum on the other axis.
Interpreting ¹H NMR Signal Splitting: The (n + 1) Rule01:10

Interpreting ¹H NMR Signal Splitting: The (n + 1) Rule

In the AX proton spin system, proton A can sense the two spin states of a coupled proton X, resulting in a doublet NMR signal with two peaks of equal (1:1) intensity. When proton A is coupled to two equivalent protons (AX2 spin system), the spin states of each X can be aligned with or against the external field, creating three possible scenarios. This results in a 1:2:1  triplet signal, where the central peak corresponds to the chemical shift of A and is twice as large or intense as the others.
2D NMR: Homonuclear Correlation Spectroscopy (COSY)01:06

2D NMR: Homonuclear Correlation Spectroscopy (COSY)

Homonuclear correlation spectroscopy, or COSY, is a 2-dimensional NMR technique that provides information about coupled protons. Typically, the geminal and vicinal coupling are observed. For example, consider the COSY spectrum of ethyl acetate, where its 1D proton NMR spectrum is plotted along the vertical and horizontal axes with their corresponding chemical shift scale. Three spots on the diagonal corresponding to the three peaks in the 1D proton spectrum are called diagonal peaks. The COSY...

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Updated: May 14, 2026

Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR
14:44

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Published on: December 16, 2013

Harmonizing Peak Matching Between Multidimensional NMR Spectra.

Anthony C Bishop1, Kyle Mimun1, Weimin Tan1

  • 1Department of Biochemistry & Biophysics, Texas A&M University, College Station, Texas 77843 USA.

Biorxiv : the Preprint Server for Biology
|May 13, 2026
PubMed
Summary
This summary is machine-generated.

This study introduces pHarmony, an automated algorithm for mapping cross-peaks in multidimensional NMR spectra. It provides reliable, harmonized matches by modeling deviations and using Bayesian inference for confidence estimates.

Keywords:
Bayesian statisticsautomationconfidence estimationcross-peak matchingheteronuclear NMRpeak tracking

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Area of Science:

  • Structural Biology
  • Analytical Chemistry
  • Computational Chemistry

Background:

  • Manual cross-peak mapping in multidimensional NMR is time-consuming and subjective.
  • Ambiguities arise in high degeneracy regions and when samples are perturbed.
  • Automated, reliable, and consistent cross-peak matching is needed for NMR data analysis.

Purpose of the Study:

  • To develop a novel, automated algorithm for harmonized cross-peak matching between multidimensional NMR spectra.
  • To provide confidence estimates for proposed cross-peak matches.
  • To address challenges in comparing spectra with perturbed samples or partial dimension matching.

Main Methods:

  • Developed a novel model for the distribution of apparent deviations between cross-peaks.
  • Applied Bayesian inference to harmonize potential mappings and provide confidence estimates.
  • Implemented the pHarmony algorithm for automated cross-peak matching.

Main Results:

  • The pHarmony algorithm successfully harmonizes cross-peak matching across spectra.
  • Confidence estimates indicate the reliability of proposed matches.
  • Demonstrated effectiveness in mapping between triple resonance spectra and heteronuclear NMR spectra from fragment-based screening.

Conclusions:

  • pHarmony offers a well-defined, consistent, and automated solution for multidimensional NMR cross-peak mapping.
  • The algorithm enhances the reliability and efficiency of NMR spectral comparison.
  • pHarmony is applicable to diverse NMR datasets, including those from fragment-based ligand discovery.