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Harnessing hybrid stacking ensemble learning for accurate pulmonary embolism diagnosis using tabular clinical data
Abeer Abdelhamid1,2, Hossam El-Din Moustafa3,4, Hala B Nafea3
1Faculty of Engineering, Electronics and Communications Engineering Department, Mansoura University, Mansoura, 35516, Egypt. abeerabdo37@std.mans.edu.eg.
Scientific Reports
|May 13, 2026
Summary
A new hybrid stacking ensemble model improves pulmonary embolism (PE) prediction using clinical data. This advanced framework enhances diagnostic accuracy and offers a robust approach for real-world applications.
Area of Science:
- Medical Informatics
- Machine Learning in Healthcare
- Clinical Decision Support Systems
Background:
- Pulmonary Embolism (PE) is a critical condition requiring prompt diagnosis for effective treatment.
- Accurate prediction of PE from clinical data is essential for timely medical intervention.
- Existing diagnostic methods may benefit from enhanced predictive modeling.
Purpose of the Study:
- To develop and evaluate a Hybrid Stacking Ensemble (HSE) framework for Pulmonary Embolism (PE) prediction.
- To leverage diverse machine learning models and an optimization algorithm for improved predictive performance.
- To assess the framework's accuracy and robustness using the RSNA-STR-PE dataset.
Main Methods:
- A hybrid stacking ensemble (HSE) framework was designed, integrating SAINT transformer, XGBoost, LightGBM, and MLP base learners.
- The Marine Predators Algorithm (MPA) was employed to optimize the weighting of base model outputs.
- A logistic regression meta-learner with L2 regularization was used for final prediction fusion.
Main Results:
- The MPA-optimized-HSE achieved a prediction accuracy of 92.3% and an AUROC of 0.91.
- The proposed ensemble model significantly outperformed individual base learners in PE prediction.
- The framework demonstrated robust performance and interpretability on tabular clinical data.
Conclusions:
- The MPA-optimized-HSE offers a powerful and reliable method for enhancing PE prediction from clinical data.
- This approach shows significant potential for improving diagnostic accuracy in real-world clinical settings.
- The study highlights the efficacy of ensemble methods combined with optimization algorithms in medical diagnostics.
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