Related Experiment Video
Updated: Jun 29, 2026

08:49
Whole-Brain Single-Cell Imaging and Analysis of Intact Neonatal Mouse Brains Using MRI, Tissue Clearing, and Light-Sheet Microscopy
Published on: August 1, 2022
A human-in-the-loop explanation framework for morphologically transparent AI predictions from whole-slide images
Peiliang Lou1, Yitan Zhu2, Nicholas Chia2
1Division of Computational Biology, Mayo Clinic, Rochester, MN, USA.
NPJ Digital Medicine
|May 14, 2026
Summary
This study introduces MorphoXAI, a human-in-the-loop framework for interpretable deep learning in digital pathology. MorphoXAI enhances pathologist-AI collaboration by providing clear, morphology-based explanations for whole-slide image predictions.
Area of Science:
- Computational pathology
- Digital pathology
- Artificial intelligence in medicine
Background:
- Deep learning models for whole-slide image (WSI) analysis lack transparency, functioning as 'black boxes'.
- This opacity hinders interpretability and clinical adoption of AI in diagnostics.
- Understanding the histomorphological patterns driving AI predictions is crucial for trust and verification.
Purpose of the Study:
- To develop and validate MorphoXAI, a human-in-the-loop framework for interpretable deep learning in WSI analysis.
- To provide both global and local explanations grounded in expert-interpreted morphology.
- To enhance pathologist-AI collaboration and facilitate transparent clinical deployment.
Main Methods:
- Proposed MorphoXAI, a framework integrating human-expert interpretations into deep learning models.
- Implemented global interpretability to identify patterns distinguishing WSI classes and confusions.
- Implemented local interpretability to pinpoint patterns and regions relevant to individual WSI predictions.
Main Results:
- MorphoXAI generated explanations accurately reflecting histomorphology at both global and local levels across diverse WSI tasks.
- Human evaluation confirmed explanations were easy to interpret, diagnostically rich, and aided decision-making.
- The framework successfully enhanced pathologist-AI collaboration.
Conclusions:
- Unifying global and local explanations grounded in expert morphology improves interpretability and verifiability of deep learning models.
- MorphoXAI facilitates transparent deployment of AI in clinical diagnostic settings.
- The framework supports enhanced pathologist-AI collaboration for improved diagnostic accuracy.

