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Functional Precision Oncology Approach Using Nanoliter Droplet Array for Drug Sensitivity Testing in Lung Cancer
Maryam Salarian1, Vicky L Schiling1, Thomas Muley2,3
1Institute of Biological and Chemical Systems-Functional Molecular Systems (IBCS-FMS), Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany.
Abstract:
Functional precision oncology aims to support personalized cancer therapy by assessing drug sensitivity in patient-derived tumor cells ex vivo. However, conventional drug sensitivity and resistance testing (DSRT) platforms typically require large numbers of cells, limiting their applicability to surgically resected tumors and posing challenges for patients diagnosed at advanced stages, where only small biopsy samples are available. To address this limitation, we developed a miniaturized DSRT workflow based on a Droplet Microarray (DMA) chip, which comprises 672 hydrophilic spots separated by superhydrophobic borders and enables high-throughput screening in nanoliter volumes. Using 300 cells per 200-nL droplet, lung cancer cells freshly isolated from surgical specimens were tested against 12 compounds across five concentrations and five replicates (360 experimental conditions). This required approximately 120,000 cells total, including additional cells for handling and processing. The approach generated drug-specific dose-response profiles and variable IC50 values across tumors of the same subtype. Comparable drug responses were also observed across three spatially distinct regions of the same tumor, indicating consistent assay performance. Overall, these results demonstrate that DSRT on the DMA platform is feasible with limited numbers of cells derived from clinical samples and may be useful for functional drug testing when tissue availability is constrained.
Insights
A new miniaturized drug sensitivity and resistance testing (DSRT) workflow uses nanoliter volumes on a Droplet Microarray (DMA) chip. This approach enables high-throughput functional drug testing on limited patient tumor cells, advancing precision oncology.
Area of Science:
- Oncology
- Biotechnology
- Microfluidics
Background:
- Functional precision oncology personalizes cancer therapy using patient-derived tumor cells.
- Conventional drug sensitivity and resistance testing (DSRT) requires large cell numbers, limiting its use with small biopsy samples.
Purpose of the Study:
- To develop a miniaturized DSRT workflow for high-throughput drug sensitivity screening using limited patient tumor cells.
- To assess the feasibility of DSRT on a Droplet Microarray (DMA) chip with nanoliter volumes.
Main Methods:
- Developed a miniaturized DSRT workflow utilizing a Droplet Microarray (DMA) chip with 672 spots for nanoliter-volume screening.
- Tested lung cancer cells from surgical specimens against 12 compounds across multiple concentrations and replicates, using approximately 120,000 cells.
Main Results:
- Generated drug-specific dose-response profiles and IC50 values from limited clinical samples.
- Demonstrated consistent drug response assay performance across spatially distinct regions of the same tumor.
- Showcased the feasibility of DSRT on the DMA platform with significantly reduced cell input.
Conclusions:
- DSRT on the DMA platform is effective with limited patient-derived tumor cells.
- This miniaturized approach supports functional drug testing when tissue availability is constrained, aiding personalized cancer therapy.
