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Updated: May 17, 2026

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Manual Segmentation of the Human Choroid Plexus Using Brain MRI
Published on: December 15, 2023
Automatic choroid plexus assessment in SLE: a deep learning-enabled study
Jun-Qi Chang1, Jia-Cheng Hao2, Xiao-Di Zhang3
1Department of Radiology, Tianjin First Center Hospital, Tianjin, China.
Neuroradiology
|May 15, 2026
Summary
Enlarged choroid plexus volume is a key biomarker and mediator of processing speed and attention deficits in SLE patients. A deep learning model accurately quantifies this, aiding in risk stratification for SLE-PSAD.
Area of Science:
- Neuroimaging and Artificial Intelligence
- Systemic Lupus Erythematosus (SLE) Pathophysiology
- Cognitive Neuroscience
Background:
- Systemic Lupus Erythematosus (SLE) can affect cognitive function, specifically processing speed and attention deficits (PSAD), even without major neuropsychiatric syndromes.
- The choroid plexus (ChP) role in SLE-related cognitive dysfunction is not fully understood.
- Accurate quantification of ChP volume is crucial for investigating its association with systemic inflammation and cognitive impairments.
Purpose of the Study:
- To develop and validate a deep learning model (Swin-UNETR) for automated choroid plexus segmentation.
- To investigate the relationship between ChP volume, systemic inflammation, and PSAD in SLE patients.
- To identify biomarkers for predicting PSAD risk in SLE.
Main Methods:
- A multicenter retrospective study included 137 SLE patients and 159 healthy controls (HCs).
- The Swin-UNETR model was trained for ChP segmentation on 3D T1-weighted MR images.
- Correlation, mediation, and LASSO regression analyses were performed to assess relationships between ChP volume, systemic inflammation index (SII), complement component 3 (C3), and PSAD.
Main Results:
- Swin-UNETR demonstrated high accuracy in ChP segmentation (median DSC=0.89 internal, 0.82 external).
- SLE patients with PSAD exhibited significantly greater ChP volume compared to SLE patients without PSAD and HCs.
- Increased ChP volume, elevated SII, and low C3 were identified as independent risk factors for PSAD, with ChP volume mediating the SII-PSAD relationship.
Conclusions:
- Enlarged ChP volume serves as a significant biomarker and mediator for PSAD in SLE patients.
- The Swin-UNETR deep learning model provides accurate ChP quantification.
- A three-biomarker panel (ChP volume, C3, SII) offers a practical approach for SLE-PSAD risk stratification.