Single-cell transcriptomics reveals anti-inflammatory effects of prednisolone on the hepatic niche in biliary atresia

Paul D Blakeley1, Fangran Liu1, Zhongluan Wu1

  • 1Department of Surgery, Li Ka Shing Faculty of Medicine, School of Clinical Medicine, Queen Mary Hospital, The University of Hong Kong, 102 Pokfulam Road, Hong Kong SAR, China.

Scientific Reports
|May 19, 2026
PubMed

Insights

Prednisolone treatment ameliorates biliary atresia (BA) by modulating liver cells. It suppresses inflammation and promotes cell quiescence, offering a potential therapeutic strategy for this pediatric liver disease.

Area of Science:

  • Hepatology
  • Immunology
  • Molecular Biology

Background:

  • Biliary atresia (BA) is a severe pediatric liver disease causing bile duct obstruction and fibrosis.
  • Current treatments for BA are limited, often requiring surgery or transplantation.
  • The effectiveness and mechanism of prednisolone in BA treatment are not well-established.

Purpose of the Study:

  • To investigate the therapeutic effects and underlying mechanisms of prednisolone in a Rhesus Rotavirus (RRV)-induced mouse model of biliary atresia.
  • To identify specific cell populations and gene regulatory networks (GRNs) involved in prednisolone's action.

Main Methods:

  • Induction of BA in mice using Rhesus Rotavirus (RRV).
  • Administration of prednisolone or placebo (PBS) to infected mice.
  • Single-cell RNA sequencing (scRNA-seq) and immunohistochemistry on liver tissues.
  • Computational reconstruction of gene regulatory networks.

Main Results:

  • Prednisolone treatment reduced pro-inflammatory macrophages and increased immunosuppressive Kupffer cells.
  • Prednisolone promoted the deactivation of hepatic stellate cells (HSCs) into a quiescent state.
  • A pro-inflammatory myofibroblast subpopulation (MFB-2), driven by the Fosl1-Hnf1b GRN, was identified and showed resistance to prednisolone.
  • HSC and MyoFb subtypes were conserved in BA patient livers.

Conclusions:

  • Prednisolone transforms the liver immune-mesenchymal niche from inflammatory to regenerative in BA.
  • Modulation of GRNs in HSCs is crucial for prednisolone's therapeutic effect in BA.
  • Targeting specific HSC and myofibroblast subpopulations may offer novel therapeutic strategies for biliary atresia.